Metam
ORF

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Transcript

Transcript

ID CARD

MetamORF ID

2703

ID

ENSMUST00000113498

Name

Fbln2-202

Strand

+

Biotype

protein_coding

Start-end positions

91212455-91272539

CDS Start-stop positions

91233076-91271879

CDS Relative positions

-

Sequences

Transcript sequence

GAT ...

Gene

ID

NCBI:14115

Aliases

5730577E14Rik,
ENSMUSG00000064080, Fbln2, FIBL-2,
MGI:95488, NCBI:14115, OFF:Fbln2


Chr 6

ORFs

140 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

578516 96

CTG ...

LQP ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
1514544 213

GTG ...

VLP ...

Ribo-seq
GTG moderate 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, NSC
1514326 39

CTG ...

LLC ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, NSC
587777 165

CTG ...

LHG ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, NSC, v6-5
586627 249

ATG ...

MCD ...

Ribo-seq
ATG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF, NSC,
v6-5
1514468 69

GTG ...

VVA ...

Ribo-seq
GTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, NSC
576268 177

GTG ...

VRA ...

Ribo-seq
GTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF
1095621 54

ATG ...

MSA ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
581285 132

GTG ...

VYQ ...

Ribo-seq
GTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, NSC
576529 111

ATG ...

MHI ...

Ribo-seq
ATG weak 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, v6-5
578419 81

GTG ...

VLH ...

Ribo-seq
GTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
584716 180

ATG ...

MSV ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, NSC, v6-5
1091769 141

GTG ...

VSS ...

Ribo-seq
GTG moderate 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, NSC, v6-5
1515617 51

CTG ...

LPT ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC
575129 72

CTG ...

LHQ ...

Ribo-seq
CTG weak 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, MEF, v6-5
1091644 201

CTG ...

LLA ...

Ribo-seq
CTG moderate 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
578815 45

CTG ...

LLP ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC
1095036 204

ATG ...

MLL ...

Ribo-seq
ATG moderate 4 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC, v6-5
584215 66

GTG ...

VCM ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, NSC
577953 96

CTG ...

LRP ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
582547 102

CTG ...

LRL ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
577668 126

GTG ...

VHW ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
585086 213

TTG ...

LST ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, NSC, v6-5
1513870 57

GTG ...

VLL ...

Ribo-seq
GTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC
583072 204

GTG ...

VCS ...

Ribo-seq
GTG weak 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF, NSC
1092603 75

CTG ...

LRG ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
1091340 75

TTG ...

LPA ...

Ribo-seq
TTG moderate 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, v6-5
577115 93

CTG ...

LRA ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, v6-5
581481 162

ATG ...

MPG ...

Ribo-seq
ATG weak 3 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Glioma, Liver,
MEF, MESC
2962 237

GTG ...

VSP ...

Ribo-seq
GTG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, NSC, Skin_tumor
581075 30

CTG ...

LLP ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
582504 78

GTG ...

VSC ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC
575425 144

ATG ...

MSN ...

Ribo-seq
ATG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1094320 216

GTG ...

VAV ...

Ribo-seq
GTG strong 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
586275 216

GTG ...

VWL ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
581934 42

ATG ...

MLG ...

Ribo-seq
ATG weak 1 Johnstone2016
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
1666787 51

GTG ...

VWY ...

Ribo-seq
GTG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
2902 270

CTG ...

LSV ...

Ribo-seq
CTG moderate 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, NSC, Skin_tumor
1513803 177

CTG ...

LCA ...

Ribo-seq
CTG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, NSC
579909 78

CTG ...

LHL ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
582584 117

ATG ...

MPR ...

Ribo-seq
ATG weak 2 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
578293 117

GTG ...

VAW ...

Ribo-seq
GTG strong 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, v6-5
1091388 66

ATG ...

MLH ...

Ribo-seq
ATG moderate 2 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC, v6-5
1094527 198

CTG ...

LAI ...

Ribo-seq
CTG moderate 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
1091908 117

CTG ...

LVA ...

Ribo-seq
CTG moderate 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, NSC, v6-5
1095132 36

CTG ...

LCG ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, v6-5
585869 279

ATG ...

MSV ...

Ribo-seq
ATG 5 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC, NSC, v6-5
584039 225

GTG ...

VST ...

Ribo-seq
GTG moderate 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
1666927 66

GTG ...

VAR ...

Ribo-seq
GTG strong 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
579648 120

CTG ...

LMP ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1668638 33

CTG ...

LLW ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
585450 177

GTG ...

VEQ ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
1741264 45

CTG ...

LSE ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
575252 60

GTG ...

VCM ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
585025 210

CTG ...

LGS ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
1094023 144

GTG ...

VVS ...

Ribo-seq
GTG moderate 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, NSC, v6-5
1094021 81

GTG ...

VTL ...

Ribo-seq
GTG moderate 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, NSC, v6-5
576869 123

GTG ...

VCT ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
578365 132

ATG ...

MCD ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF, v6-5
1092135 60

CTG ...

LKK ...

Ribo-seq
CTG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
1092194 63

ATG ...

MKT ...

Ribo-seq
ATG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
2798 99

TTG ...

LAA ...

Ribo-seq
TTG strong 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, NSC, Skin_tumor
579273 66

CTG ...

LPG ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
1667530 162

ATG ...

MGP ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
585596 186

GTG ...

VRP ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
586623 198

TTG ...

LIV ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, NSC, v6-5
577453 99

GTG ...

VPD ...

Ribo-seq
GTG weak 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, MEF
587053 117

GTG ...

VRD ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
NSC, v6-5
587204 102

CTG ...

LQP ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
NSC, v6-5
2922 81

GTG ...

VAG ...

Ribo-seq
GTG strong 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Skin_tumor
3315 108

TTG ...

LWT ...

Ribo-seq
TTG moderate 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, NSC, Skin_tumor
1515588 36

GTG ...

VPG ...

Ribo-seq
GTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC
1096857 57

ATG ...

MMS ...

Ribo-seq
ATG 4 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC, v6-5
587718 183

CTG ...

LPG ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
579631 138

ATG ...

MAV ...

Ribo-seq
ATG moderate 4 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Glioma, Liver,
MEF, MESC, NSC
586693 63

GTG ...

VLL ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
NSC
1514858 162

CTG ...

LCL ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, NSC
2832 114

CTG ...

LRH ...

Ribo-seq
CTG weak 2 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
NSC, Skin_tumor
585902 129

GTG ...

VCT ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC, v6-5
582933 93

ATG ...

MPE ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF, v6-5
1514027 189

GTG ...

VPA ...

Ribo-seq
GTG moderate 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, NSC
1514821 36

TTG ...

LCS ...

Ribo-seq
TTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC
586745 243

CTG ...

LRP ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, NSC, v6-5
1093440 90

CTG ...

LRR ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
1091462 63

CTG ...

LHL ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
v6-5
578961 111

GTG ...

VRD ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
575816 63

TTG ...

LHQ ...

Ribo-seq
TTG weak 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
582207 90

TTG ...

LPL ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
v6-5
579802 51

CTG ...

LQA ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
587097 105

CTG ...

LYL ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC, v6-5
580135 111

CTG ...

LPG ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
582090 93

ATG ...

MLR ...

Ribo-seq
ATG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, NSC, v6-5
583906 156

CTG ...

LRR ...

Ribo-seq
CTG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, NSC
1513694 63

ATG ...

MPT ...

Ribo-seq
ATG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
586108 273

GTG ...

VHW ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, NSC, v6-5
587759 90

ATG ...

MCQ ...

Ribo-seq
ATG 3 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC, NSC, v6-5
1670338 234

CTG ...

LAS ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Overlapping
    sORF
    Upstream
MEF
1093178 147

CTG ...

LVV ...

Ribo-seq
CTG strong 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, NSC, v6-5
586872 249

CTG ...

LRL ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, NSC, v6-5
1094051 108

ATG ...

MGT ...

Ribo-seq
ATG strong 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, NSC, v6-5
575194 36

CTG ...

LCL ...

Ribo-seq
CTG weak 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
584318 228

CTG ...

LPG ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
1669740 54

CTG ...

LVW ...

Ribo-seq
CTG strong 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
3546 57

CTG ...

LPS ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
NSC, Skin_tumor
1513833 186

CTG ...

LCY ...

Ribo-seq
CTG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, NSC
579286 48

CTG ...

LHG ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
580793 249

CTG ...

LSH ...

Ribo-seq
CTG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, NSC
578274 78

GTG ...

VSP ...

Ribo-seq
GTG weak 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, v6-5
1670371 48

CTG ...

LQA ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
581066 240

GTG ...

VAR ...

Ribo-seq
GTG strong 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF, v6-5
2927 39

CTG ...

LKR ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Skin_tumor
581386 132

ATG ...

MSV ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
1667857 33

CTG ...

LSY ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1670251 30

CTG ...

LWP ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
575262 90

GTG ...

VCD ...

Ribo-seq
GTG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
v6-5
585997 60

ATG ...

MPR ...

Ribo-seq
ATG 2 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC, NSC
2702 273

GTG ...

VLS ...

Ribo-seq
GTG weak 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, NSC, Skin_tumor
578212 189

CTG ...

LLC ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, NSC
1738972 156

CTG ...

LAS ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    sORF
    Upstream
MEF
586977 93

CTG ...

LCQ ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC, v6-5
586039 87

GTG ...

VQR ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, NSC, v6-5
586349 162

ATG ...

MIP ...

Ribo-seq
ATG 5 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Glioma, Liver,
MEF, MESC, v6-5
587197 210

ATG ...

MPE ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF, v6-5
1093100 57

GTG ...

VLL ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
580463 96

CTG ...

LTE ...

Ribo-seq
CTG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
576748 96

GTG ...

VSC ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
2765 219

CTG ...

LHR ...

Ribo-seq
CTG moderate 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF, NSC,
Skin_tumor
580338 183

CTG ...

LVS ...

Ribo-seq
CTG strong 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, NSC
578243 90

CTG ...

LPS ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC
1092218 51

CTG ...

LPS ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
582903 144

TTG ...

LWM ...

Ribo-seq
TTG moderate 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF, NSC
574961 96

ATG ...

MRR ...

Ribo-seq
ATG moderate 3 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
3T3, Glioma, Liver,
MEF, MESC
579076 156

CTG ...

LKL ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, NSC
576461 174

CTG ...

LSR ...

Ribo-seq
CTG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, NSC
575807 126

GTG ...

VTA ...

Ribo-seq
GTG moderate 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, MEF, v6-5
581010 51

GTG ...

VLL ...

Ribo-seq
GTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC
582137 225

CTG ...

LEG ...

Ribo-seq
CTG strong 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, NSC
1514378 54

GTG ...

VSQ ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC
1094422 45

TTG ...

LLP ...

Ribo-seq
TTG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
582216 153

CTG ...

LTL ...

Ribo-seq
CTG moderate 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, NSC, v6-5

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5