Transcript 49628 | MetamORF

Transcript

ID CARD

MetamORF ID

49628

ENSMUST00000113025

Name

Rab14-202

Strand

Biotype

protein_coding

Start-end positions

35180205-35201120

CDS Start-stop positions

35183727-35192672

CDS Relative positions

Sequences

Transcript sequence

GAC ...

Genome browsers

UCSC

Gene

NCBI:68365

Aliases

0610030G24Rik,
2810475J17Rik, A830021G03Rik, AI314285,
AI649155, D030017L14Rik, ENSMUSG00000026878,
MGI:1915615, NCBI:68365, OFF:Rab14,
Rab14

Chr 2

ORFs

43 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
49723	75	GTG ...	VPP ...	Ribo-seq	GTG		10	sORFs_org_Mouse	Overlapping sORF Upstream	BMDC, E14, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
970122	111	ATA ...	IQQ ...	Ribo-seq	ATA		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
114904	63	ATG ...	MLF ...	Ribo-seq	ATG	moderate	11	sORFs_org_Mouse	Downstream sORF	BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, v6-5
738217	42	GTG ...	VYN ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Downstream sORF	B_cell, BMDC, E14, NSC, R1E
1638294	39	ATG ...	MSV ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
119330	90	CTG ...	LKH ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, NSC
1462839	228	CTG ...	LNK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	CDS sORF	BMDC
116520	57	ATG ...	MLP ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Downstream sORF	BMDC, E14, NSC, R1E
115952	54	TTG ...	LGY ...	Ribo-seq	TTG	strong	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, MEF, Neutrophil, NSC, v6-5
971518	147	AAG ...	KLV ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
1010691	72	CTG ...	LVD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
1502811	198	GTG ...	VVK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	NSC
967133	231	GTG ...	VSA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF Upstream	BMDC
121800	51	GTG ...	VRS ...	Ribo-seq	GTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, E14, MEF, NSC
15191	108	CTG ...	LDL ...	Ribo-seq	CTG	strong	9	sORFs_org_Mouse	Alternative Downstream sORF	BMDC, E14, MEF, Neutrophil, NSC, R1E, v6-5
494865	33	TTG ...	LKQ ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Downstream sORF	Neutrophil
113284	45	CTG ...	LIV ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14, MEF, Neutrophil, NSC, v6-5
51158	150	TTG ...	LKL ...	Ribo-seq	TTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14, MEF, Neutrophil, NSC, Testis, v6-5
494120	141	GTG ...	VQG ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, MEF, Neutrophil
49663	141	GTG ...	VVK ...	Ribo-seq	GTG		9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, E14, MEF, Neutrophil, NSC, Testis, v6-5
48656	48	CTG ...	LPR ...	Ribo-seq	CTG	moderate	10	sORFs_org_Mouse	Downstream sORF	BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, v6-5
1461948	270	ATG ...	MCK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	CDS sORF	BMDC
965211	96	AGG ...	REP ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
49627	60	CTG ...	LHR ...	Ribo-seq	CTG		9	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, MEF, Neutrophil, R1E, Testis, v6-5
120336	57	CTG ...	LQV ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, E14, MEF, NSC
93207	60	CTG ...	LPP ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
965050	123	ATT ...	IQD ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	BMDC
47133	54	TTG ...	LRL ...	Ribo-seq	TTG	weak	9	sORFs_org_Mouse	Downstream sORF	BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, v6-5
496405	177	GTG ...	VVR ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, MEF, Neutrophil, Spleen_B_cell
45677	30	TTG ...	LFL ...	Ribo-seq	TTG	weak	6	sORFs_org_Mouse	Alternative Downstream sORF	BMDC, E14, MEF, NSC, v6-5
95581	45	CTG ...	LQP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
51489	84	TTG ...	LFL ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, BMDC, E14, MEF, Neutrophil, Testis, v6-5
969869	183	ACG ...	TDS ...	Ribo-seq	ACG		1	sORFs_org_Mouse	sORF Upstream	BMDC
120827	36	ATG ...	MTS ...	Ribo-seq	ATG		6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, E14, MEF, NSC
98239	45	CTG ...	LVY ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Downstream sORF	BMDC, E14, NSC, R1E
100237	54	CTG ...	LPS ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Downstream sORF	BMDC, Brain, E14, NSC, R1E
412372	99	CTG ...	LRE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
496510	156	GTG ...	VTG ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	MEF, Neutrophil, Spleen_B_cell
96349	36	TTG ...	LLA ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, NSC, v6-5
47626	30	CTG ...	LPS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
15783	102	CTG ...	LNA ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	Alternative Downstream sORF	BMDC, E14, MEF, Neutrophil, NSC, R1E, v6-5
971629	72	ATC ...	INL ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
969712	135	CTG ...	LTS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF Upstream	BMDC

Export data