Transcript 38956 | MetamORF

Transcript

ID CARD

MetamORF ID

38956

ENSMUST00000112571

Name

Dpy30-201

Strand

Biotype

protein_coding

Start-end positions

74299474-74316394

CDS Start-stop positions

74299752-74316079

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

NCBI:66310

Aliases

2810410M20Rik,
C87842, Dpy30, ENSMUSG00000024067,
MGI:1913560, NCBI:66310, OFF:Dpy30

Chr 17

ORFs

18 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
39157	108	TTG ...	LFC ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF, Neutrophil, Spleen_B_cell, Testis
411062	207	TTG ...	LIA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Overlapping sORF Upstream	C2C12
1047929	81	TTG ...	LCL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Neutrophil
1864851	180	TTG ...	LGR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	R1E
39210	108	CTG ...	LPA ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, MEF, R1E, Spleen_B_cell, Testis
481385	48	GTG ...	VAP ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	Neutrophil, Spleen_B_cell
390562	105	TTG ...	LQG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF, Neutrophil
390605	48	TTG ...	LLC ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, Neutrophil
483268	135	TTG ...	LQD ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF, Neutrophil, Spleen_B_cell
390220	39	TTG ...	LPR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Neutrophil
392185	45	CTG ...	LCL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Neutrophil
390192	93	GTG ...	VPT ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Neutrophil, Spleen_B_cell
385583	51	TTG ...	LQK ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, Neutrophil
389444	72	TTG ...	LCL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, Neutrophil
390454	144	ATG ...	MQK ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Neutrophil, Spleen_B_cell
38955	111	CTG ...	LLP ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, MEF, R1E, Spleen_B_cell, Testis
390947	156	ATG ...	MRR ...	Ribo-seq	ATG		3	sORFs_org_Mouse Johnstone2016	Alternative Overlapping sORF Upstream	Brain, Glioma, Liver, MEF, MESC, R1E
391456	156	ATG ...	MRR ...	Ribo-seq	ATG		2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, Spleen_B_cell

Export data