Transcript 389198

Transcript

ID CARD

MetamORF ID

389198

ENSMUST00000112487

Name

Fez2-202

Strand

Biotype

protein_coding

Start-end positions

78377885-78418131

CDS Start-stop positions

78378729-78418083

CDS Relative positions

Sequences

Transcript sequence

GAC ...

Genome browsers

UCSC

Gene

NCBI:225020

Aliases

9030616F16,
D17Ertd315e, ENSMUSG00000056121, Fez2,
MGI:2675856, NCBI:225020, OFF:Fez2

Chr 17

ORFs

20 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1770156	36	ATG ...	MIS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
702827	117	TTG ...	LRC ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, MEF
390828	48	TTG ...	LSP ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver, MEF
712054	111	TTG ...	LAV ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
1770955	42	GTG ...	VGA ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Downstream sORF	MEF
1716499	69	TTG ...	LSP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
703646	84	CTG ...	LRS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, MEF
36235	54	GTG ...	VAA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, MEF
708816	51	ATG ...	MNS ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, MEF
709017	132	ATG ...	MSS ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
1771087	75	CTG ...	LPR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Downstream sORF	MEF
1770852	45	ATG ...	MVG ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Downstream sORF	MEF
39418	192	CTG ...	LND ...	Ribo-seq	CTG		6	sORFs_org_Mouse	CDS sORF	3T3, Brain, E14, Liver, MEF
1770694	96	ATG ...	MVL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Downstream sORF	MEF
1770727	93	GTG ...	VLF ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Downstream sORF	MEF
705704	156	CTG ...	LTG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
709192	36	GTG ...	VAR ...	Ribo-seq	GTG	strong	5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, MEF
1769977	78	ATG ...	MLP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Downstream sORF	MEF
1360572	39	GTG ...	VST ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, MEF
708085	30	GTG ...	VRE ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, MEF

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