Transcript 199395

Transcript

ID CARD

MetamORF ID

199395

ENSMUST00000112417

Name

Ing4-202

Strand

Biotype

nonsense_mediated_decay

Start-end positions

125039861-125049265

CDS Start-stop positions

125039861-125047920

CDS Relative positions

Sequences

Transcript sequence

ATG ...

Genome browsers

UCSC

Gene

NCBI:28019

Aliases

D6Wsu147e,
D6Xrf92, ENSMUSG00000030330, Ing4,
MGI:107307, NCBI:28019, OFF:Ing4,
p29ING4

Chr 6

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
203483	96	TTG ...	LAV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative CDS NMD sORF	v6-5
193075	60	CTG ...	LWI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative CDS NMD sORF	v6-5
3283	45	TTG ...	LPL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Downstream NMD Overlapping sORF	E14, MEF, v6-5
203983	75	ATG ...	MCW ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative CDS NMD sORF	v6-5
203727	36	GTG ...	VGL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14, NSC, v6-5
201248	132	GTG ...	VLD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	v6-5
2707	39	TTG ...	LSP ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Downstream NMD Overlapping sORF	E14, v6-5
194006	141	CTG ...	LSS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Neutrophil
198133	78	CTG ...	LMC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative CDS NMD sORF	v6-5
1514853	51	CTG ...	LCG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	NSC
199612	174	TTG ...	LAT ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, E14, Neutrophil
69627	69	CTG ...	LPE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
200005	195	CTG ...	LKA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, Neutrophil, v6-5
194678	123	CTG ...	LAL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Neutrophil
200876	129	TTG ...	LDM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	v6-5
1091998	30	TTG ...	LNY ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	v6-5
202919	162	GTG ...	VTF ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	E14, v6-5
193947	90	GTG ...	VST ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative CDS NMD sORF	v6-5
201907	45	TTG ...	LKT ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, NSC, v6-5
415588	66	TTG ...	LEH ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	C2C12
194037	30	CTG ...	LTT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	v6-5
580030	33	CTG ...	LKL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF

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