Transcript 186371

Transcript

ID CARD

MetamORF ID

186371

ENSMUST00000112256

Name

Rint1-202

Strand

Biotype

processed_transcript

Start-end positions

23787741-23797057

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CCC ...

Genome browsers

UCSC

Gene

NCBI:72772

Aliases

1500019C06Rik,
2810450M21Rik, ENSMUSG00000028999, MGI:1916233,
NCBI:72772, OFF:Rint1, Rint-1,
Rint1

Chr 5

ORFs

9 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
172874	42	TTG ...	LRL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
61716	30	GTG ...	VVT ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
169377	75	ATG ...	MES ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Spleen_B_cell
186370	75	TTG ...	LKT ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, MEF, R1E
190570	96	GTG ...	VGS ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, MEF, R1E
519360	117	GTG ...	VCS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Spleen_B_cell
520844	132	CTG ...	LVA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Spleen_B_cell
61526	36	CTG ...	LTI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
187628	120	GTG ...	VSA ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, MEF, R1E

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