Transcript 1714 | MetamORF

Transcript

ID CARD

MetamORF ID

1714

ENSMUST00000110731

Name

Kdelr2-201

Strand

Biotype

protein_coding

Start-end positions

143403838-143421901

CDS Start-stop positions

143403962-143420835

CDS Relative positions

Sequences

Transcript sequence

TCC ...

Genome browsers

UCSC

Gene

NCBI:66913

Aliases

1110007A14Rik,
ENSMUSG00000079111, Kdelr2, MGI:1914163,
NCBI:66913, OFF:Kdelr2

Chr 5

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1760	36	CTG ...	LDL ...	Ribo-seq	CTG	moderate	11	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, NSC, R1E, Skin_tumor, Spleen_B_cell, v6-5
61478	48	CTG ...	LPS ...	Ribo-seq	CTG	weak	18	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, C2C12, E14, Liver, MEF, Neutrophil, Spleen_B_cell, Testis, v6-5
1238039	99	ATC ...	IFR ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
61504	93	CTG ...	LGR ...	Ribo-seq	CTG	moderate	19	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
64920	69	CTG ...	LSP ...	Ribo-seq	CTG	weak	12	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, E14, Liver, MEF, Neutrophil, Spleen_B_cell, Testis, v6-5
167684	30	TTG ...	LPA ...	Ribo-seq	TTG	moderate	14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, R1E, Spleen_B_cell, v6-5
63255	216	CTG ...	LAT ...	Ribo-seq	CTG		16	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, Testis
904588	210	ACG ...	TSR ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC
64048	126	GTG ...	VPL ...	Ribo-seq	GTG		19	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
1713	30	CTG ...	LAL ...	Ribo-seq	CTG	strong	11	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, NSC, R1E, Skin_tumor, Spleen_B_cell, v6-5
182574	78	ATG ...	MDL ...	Ribo-seq	ATG	moderate	15	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, Spleen_B_cell, v6-5
62356	45	CTG ...	LGT ...	Ribo-seq	CTG	moderate	16	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, R1E, Spleen_B_cell, Testis, v6-5
65752	120	CTG ...	LCR ...	Ribo-seq	CTG		20	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
64625	90	CTG ...	LVS ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, NSC, Testis
62518	99	CTG ...	LWW ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, MEF, NSC, Testis
63667	216	CTG ...	LAR ...	Ribo-seq	CTG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, NSC, Spleen_B_cell, Testis, v6-5
61822	102	TTG ...	LLW ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, MEF, NSC, Testis
66259	207	CTG ...	LRP ...	Ribo-seq	CTG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, C2C12, E14, Liver, MEF, NSC, Spleen_B_cell, Testis, v6-5
64750	72	CTG ...	LLS ...	Ribo-seq	CTG	moderate	13	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, E14, Liver, MEF, Neutrophil, Spleen_B_cell, Testis, v6-5
61686	42	CTG ...	LLL ...	Ribo-seq	CTG	weak	15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
173197	51	ATG ...	MME ...	Ribo-seq	ATG	weak	15	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, R1E, Spleen_B_cell, v6-5
63150	111	TTG ...	LIS ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, MEF, NSC, Spleen_B_cell, Testis
901980	42	ATC ...	ITI ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
173552	48	ATG ...	MEI ...	Ribo-seq	ATG	strong	14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, C2C12, E14, Liver, MEF, R1E, Spleen_B_cell, v6-5
61467	87	GTG ...	VSS ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, NSC, R1E, Testis

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