Transcript 24452 | MetamORF

Transcript

ID CARD

MetamORF ID

24452

ENSMUST00000110354

Name

Srsf5-204

Strand

Biotype

protein_coding

Start-end positions

80945520-80950503

CDS Start-stop positions

80946595-80949978

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

NCBI:20384

Aliases

ENSMUSG00000021134,
MGI:98287, NCBI:20384, OFF:Srsf5,
Sfrs5, Srsf5

Chr 12

ORFs

7 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1298686	42	AGG ...	RQQ ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1300642	63	AGG ...	RQQ ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
419956	51	ATG ...	MWK ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
24451	33	CTG ...	LLS ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative sORF Upstream	E14, Neutrophil, Spleen_B_cell, Testis, v6-5
940713	123	TTG ...	LWR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF Upstream	BMDC
975637	78	ATC ...	IPF ...	Ribo-seq	ATC	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
419993	237	TTG ...	LGS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14

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