Transcript 47482 | MetamORF

Transcript

ID CARD

MetamORF ID

47482

ENSMUST00000110120

Name

Tmx4-203

Strand

Biotype

protein_coding

Start-end positions

134607466-134644041

CDS Start-stop positions

134609480-134644005

CDS Relative positions

Sequences

Transcript sequence

GCC ...

Genome browsers

UCSC

Gene

NCBI:52837

Aliases

2810417D04Rik,
4930500L08Rik, AI843224, AW046784,
D2Bwg1356e, ENSMUSG00000034723, MGI:106558,
mKIAA1162, NCBI:52837, OFF:Tmx4,
Tmx4, Txndc13

Chr 2

ORFs

27 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
102608	123	ATG ...	MLH ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Neutrophil
93413	72	TTG ...	LQR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Neutrophil
119365	120	ATG ...	MLH ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Neutrophil
104926	63	ATG ...	MEK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Neutrophil
50602	99	TTG ...	LSP ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Neutrophil, Testis
126266	150	GTG ...	VLI ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Neutrophil
104987	42	TTG ...	LSP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
49165	63	ATG ...	MGY ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Neutrophil, Testis
95290	42	GTG ...	VVQ ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF, Neutrophil
112599	36	CTG ...	LVF ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Neutrophil
51177	90	CTG ...	LIL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Neutrophil, Testis
120753	111	GTG ...	VAA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Neutrophil
1421233	249	CTG ...	LLN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	CDS sORF	Liver
51294	84	CTG ...	LNG ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Neutrophil, Testis
97406	87	CTG ...	LNG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Neutrophil
49925	69	TTG ...	LQR ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Neutrophil, Testis
124695	291	TTG ...	LFM ...	Ribo-seq	TTG		3	sORFs_org_Mouse	CDS sORF	Brain
124563	297	CTG ...	LFL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	CDS sORF	Brain
50820	39	GTG ...	VWE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Neutrophil, Testis
50475	60	ATG ...	MEK ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Neutrophil, Testis
118027	147	TTG ...	LIS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Neutrophil
114446	39	TTG ...	LSL ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, NSC
102175	45	CTG ...	LEW ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Neutrophil
1503650	39	CTG ...	LEV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
47481	72	GTG ...	VQK ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Neutrophil, Testis
118422	285	ATG ...	MFF ...	Ribo-seq	ATG		3	sORFs_org_Mouse	CDS sORF	Brain
106346	93	CTG ...	LIL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Neutrophil

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