Transcript 493068

Transcript

ID CARD

MetamORF ID

493068

ENSMUST00000110089

Name

Mkks-202

Strand

Biotype

protein_coding

Start-end positions

136873780-136891389

CDS Start-stop positions

136874266-136881235

CDS Relative positions

Sequences

Transcript sequence

CTT ...

Genome browsers

UCSC

Gene

NCBI:59030

Aliases

1300013E18Rik,
AI463362, AI957237, Bbs6,
ENSMUSG00000027274, MGI:1891836, Mkks,
NCBI:59030, OFF:Mkks

Chr 2

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
96085	135	CTG ...	LMS ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	sORF Upstream	3T3, Brain, Liver
93125	138	GTG ...	VLM ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	sORF Upstream	3T3, Brain, Liver
113018	102	CTG ...	LER ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	sORF Upstream	3T3, Brain
46552	108	TTG ...	LGW ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	Brain, Liver
99200	132	ATG ...	MST ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	sORF Upstream	3T3, Brain, Liver
46072	144	CTG ...	LMV ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, Liver
728016	42	TTG ...	LEH ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
493067	63	GTG ...	VVA ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	sORF Upstream	Spleen_B_cell
95688	42	GTG ...	VAQ ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	sORF Upstream	Brain, Liver
93165	171	TTG ...	LII ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF Upstream	3T3
44371	141	ATG ...	MVM ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, Liver
96270	45	CTG ...	LDS ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
46215	180	ATG ...	MSF ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, Liver
738359	90	CTG ...	LAS ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
94019	114	GTG ...	VAG ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF Upstream	3T3
493122	60	CTG ...	LRG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	Spleen_B_cell
116128	45	GTG ...	VRS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	sORF Upstream	3T3
730436	48	GTG ...	VQA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
116496	177	CTG ...	LNL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF Upstream	3T3
97402	153	ATG ...	MKN ...	Predicted Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Mackowiak2015	sORF Upstream	3T3
97361	183	TTG ...	LNL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF Upstream	3T3
97870	105	GTG ...	VTF ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF Upstream	3T3
498618	60	GTG ...	VAL ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	sORF Upstream	Spleen_B_cell
45813	135	ATG ...	MVP ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, Liver
496105	81	TTG ...	LPR ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	sORF Upstream	Spleen_B_cell

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