Transcript 44478 | MetamORF

Transcript

ID CARD

MetamORF ID

44478

ENSMUST00000109533

Name

Src-205

Strand

Biotype

protein_coding

Start-end positions

157418444-157471835

CDS Start-stop positions

157457085-157469961

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

NCBI:20779

Aliases

AW259666,
ENSMUSG00000027646, MGI:98397, NCBI:20779,
OFF:Src, pp60c-src, Src

Chr 2

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
112199	33	CTG ...	LYP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
121536	117	TTG ...	LWP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
114752	87	GTG ...	VPV ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
968746	33	ACG ...	TET ...	Ribo-seq	ACG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
120325	105	ATG ...	MTM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
965860	45	CTG ...	LLP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
45334	33	TTG ...	LRP ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	Brain, Testis
45906	36	ATG ...	MLR ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, Testis
116331	81	GTG ...	VLA ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
112776	66	CTG ...	LKL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
96524	60	GTG ...	VLS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, Brain, MEF
44477	48	CTG ...	LQV ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	Testis
1643509	54	CTG ...	LSW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF Upstream	MEF
1644847	45	GTG ...	VSF ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF Upstream	MEF
93969	180	CTG ...	LER ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
98274	30	CTG ...	LSQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
110397	147	CTG ...	LPL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
103934	57	CTG ...	LSD ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative sORF Upstream	C2C12, MEF
120935	153	CTG ...	LPL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
125928	99	ATG ...	MSH ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain
103370	48	GTG ...	VPT ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
48846	42	GTG ...	VRM ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	Testis
120194	81	CTG ...	LTC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
964691	33	AGG ...	RLS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC

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