Transcript 52652 | MetamORF

Transcript

ID CARD

MetamORF ID

52652

ENSMUST00000107924

Name

Selenot-201

Strand

Biotype

protein_coding

Start-end positions

58576636-58593133

CDS Start-stop positions

58576737-58590291

CDS Relative positions

Sequences

Transcript sequence

GAC ...

Genome browsers

UCSC

Gene

NCBI:69227

Aliases

2810407C02Rik,
5730408P04Rik, ENSMUSG00000075700, MGI:1916477,
NCBI:69227, OFF:Selenot, Selenot,
Selt

Chr 3

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
55036	93	TTG ...	LRS ...	Ribo-seq	TTG		10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, MEF, NSC, Spleen_B_cell, Testis, v6-5
820084	36	ATG ...	MYD ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
52651	36	CTG ...	LPT ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver, Testis
134875	93	TTG ...	LRS ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, Spleen_B_cell
144652	45	TTG ...	LKA ...	Ribo-seq	TTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, NSC, Spleen_B_cell
821611	72	TTG ...	LLF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
895500	54	AAG ...	KLL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
893364	93	ATC ...	ILL ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
133504	45	TTG ...	LKA ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Liver, Spleen_B_cell
894391	42	AGG ...	RPL ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
134319	33	GTG ...	VAR ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, Brain, MEF
895464	78	ATC ...	ILL ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
143618	87	TTG ...	LAK ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, NSC
893458	105	TTG ...	LLA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
133155	81	ATG ...	MCQ ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, NSC
55462	33	TTG ...	LCI ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, MEF, Testis, v6-5
143427	90	TTG ...	LLA ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, NSC
129136	54	CTG ...	LDI ...	Ribo-seq	CTG	strong	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, NSC, v6-5
1506264	75	ATG ...	MCI ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	NSC

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