Transcript 295945

Transcript

ID CARD

MetamORF ID

295945

ENSMUST00000106779

Name

Ddx5-203

Strand

Biotype

processed_transcript

Start-end positions

106783312-106788467

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CCT ...

Genome browsers

UCSC

Gene

NCBI:13207

Aliases

2600009A06Rik,
Ddx5, ENSMUSG00000020719, G17P1,
Hlr1, HUMP68, MGI:105037,
NCBI:13207, OFF:Ddx5, p68

Chr 11

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
19714	69	CTG ...	LSA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Liver
303762	39	CTG ...	LNF ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, MEF
975408	111	TTG ...	LLP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
17303	153	CTG ...	LID ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
91331	54	TTG ...	LSL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14
1285099	42	ATT ...	IVD ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	E14
1285068	51	ATT ...	ILQ ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	E14
1288902	102	GTG ...	VQT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	E14
91089	75	CTG ...	LEL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Liver
1293107	117	CTG ...	LME ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
90669	183	GTG ...	VEI ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, E14
21660	39	CTG ...	LIA ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Liver, MEF
8903	30	CTG ...	LLN ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Liver
1286965	123	ATT ...	IRL ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	E14
1036205	48	TTG ...	LMK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
1292751	93	ATA ...	ITF ...	Ribo-seq	ATA		1	sORFs_org_Mouse	ncRNA sORF	E14
20648	30	TTG ...	LLP ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Liver
20461	120	CTG ...	LRR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain
308137	45	GTG ...	VWE ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Liver, R1E
931131	111	ATT ...	IQT ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	E14
19554	108	CTG ...	LKD ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Liver
20128	102	GTG ...	VAA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1284805	84	ATT ...	IGA ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	E14
295944	30	CTG ...	LSK ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain
931998	51	ATA ...	IRK ...	Ribo-seq	ATA		1	sORFs_org_Mouse	ncRNA sORF	E14

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