Transcript 7947 | MetamORF

Transcript

ID CARD

MetamORF ID

7947

ENSMUST00000106677

Name

Prkar1a-203

Strand

Biotype

protein_coding

Start-end positions

109649405-109669656

CDS Start-stop positions

109653785-109667602

CDS Relative positions

Sequences

Transcript sequence

GTT ...

Genome browsers

UCSC

Gene

NCBI:19084

Aliases

1300018C22Rik,
ENSMUSG00000020612, MGI:104878, NCBI:19084,
OFF:Prkar1a, Prkar1a, RIalpha,
Tse-1, Tse1

Chr 11

ORFs

47 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
18389	48	CTG ...	LKF ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, R1E, Spleen_B_cell, Testis
1838918	57	ATG ...	MAT ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	R1E
23150	93	GTG ...	VLS ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, R1E, Spleen_B_cell, Testis
21784	36	CTG ...	LRR ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, Spleen_B_cell, Testis
18720	87	CTG ...	LAV ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, C2C12, MEF, Spleen_B_cell, Testis
445981	48	GTG ...	VGA ...	Ribo-seq	GTG	moderate	14	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
930945	39	AGG ...	RTR ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
293639	30	CTG ...	LPL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Spleen_B_cell
90847	48	TTG ...	LLK ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, MEF, Testis
294282	84	TTG ...	LML ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
23653	84	GTG ...	VLK ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, R1E, Spleen_B_cell, Testis
23590	108	TTG ...	LMI ...	Ribo-seq	TTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain, MEF, Spleen_B_cell, Testis
296993	66	GTG ...	VEG ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	sORF Upstream	B_cell, C2C12, Spleen_B_cell
8373	30	GTG ...	VST ...	Ribo-seq	GTG	weak	8	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain, MEF, R1E, Skin_tumor, Spleen_B_cell, Testis
22596	81	CTG ...	LKF ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, R1E, Spleen_B_cell, Testis
1285846	141	AGG ...	RRE ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
7946	69	GTG ...	VRK ...	Ribo-seq	GTG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, MEF, Skin_tumor, Spleen_B_cell, Testis
90725	72	CTG ...	LSS ...	Ribo-seq	CTG	moderate	14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, NSC, Spleen_B_cell, Testis, v6-5
418911	99	ACG ...	TQE ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative sORF Upstream	C2C12
301905	63	ATG ...	MSI ...	Ribo-seq	ATG	weak	10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, MEF, Spleen_B_cell, v6-5
21009	45	ATG ...	MEH ...	Ribo-seq	ATG	moderate	14	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, NSC, Spleen_B_cell, Testis, v6-5
1843467	60	ATG ...	MMA ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	R1E
299070	36	TTG ...	LGK ...	Ribo-seq	TTG	strong	8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, MEF, Spleen_B_cell, v6-5
8457	60	GTG ...	VGH ...	Ribo-seq	GTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, MEF, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
21604	84	CTG ...	LLC ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, MEF, Spleen_B_cell, Testis
8949	51	CTG ...	LTR ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, MEF, R1E, Skin_tumor, Spleen_B_cell, Testis
91692	57	ATG ...	MDR ...	Ribo-seq	ATG	strong	13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, NSC, Spleen_B_cell, Testis, v6-5
20926	162	ATG ...	MGN ...	Ribo-seq	ATG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, NSC, Spleen_B_cell, Testis, v6-5
995078	81	ATG ...	MLC ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14
22694	69	CTG ...	LRR ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, Spleen_B_cell, Testis
17880	81	CTG ...	LCC ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, MEF, Spleen_B_cell, Testis
295327	33	ATG ...	MKN ...	Ribo-seq	ATG	weak	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
453596	39	GTG ...	VLG ...	Ribo-seq	GTG	weak	8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, MEF, Spleen_B_cell, v6-5
23135	105	ATG ...	MIT ...	Ribo-seq	ATG		6	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain, MEF, Spleen_B_cell, Testis
21528	84	ATG ...	MHW ...	Ribo-seq	ATG	weak	15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
91257	33	ATG ...	MCR ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, MEF, Spleen_B_cell, Testis
90910	45	TTG ...	LKW ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, Spleen_B_cell, Testis
446484	51	GTG ...	VHY ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, Spleen_B_cell
1291001	144	ACG ...	TRP ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
20166	63	TTG ...	LKM ...	Ribo-seq	TTG	moderate	12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, NSC, Spleen_B_cell, Testis, v6-5
8804	114	ATG ...	MRA ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, Skin_tumor, Spleen_B_cell, Testis
932797	30	AAG ...	KHS ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
17804	60	GTG ...	VLS ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, R1E, Spleen_B_cell, Testis
302576	54	ATG ...	MNG ...	Ribo-seq	ATG	moderate	9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, MEF, Spleen_B_cell, v6-5
933726	57	ACG ...	TKN ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
20326	51	GTG ...	VLK ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, R1E, Spleen_B_cell, Testis
24262	126	ATG ...	MCC ...	Ribo-seq	ATG		6	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain, MEF, Spleen_B_cell, Testis

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