Transcript 544692

Transcript

ID CARD

MetamORF ID

544692

ENSMUST00000106213

Name

Macf1-204

Strand

Biotype

protein_coding

Start-end positions

123349716-123476367

CDS Start-stop positions

123350889-123476271

CDS Relative positions

Sequences

Transcript sequence

TTC ...

Genome browsers

UCSC

Gene

NCBI:11426

Aliases

ABP620,
Acf7, Aclp7, ENSMUSG00000028649,
MACF, Macf1, MGI:108559,
mKIAA0465, NCBI:11426, OFF:Macf1,
R74989

Chr 4

ORFs

84 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
550505	48	GTG ...	VET ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
547967	87	CTG ...	LKQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
545679	57	ATG ...	MLS ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
557368	117	CTG ...	LVL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
555167	255	TTG ...	LTE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
557188	57	TTG ...	LML ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
554101	87	CTG ...	LSQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
551359	45	GTG ...	VNS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
558686	78	CTG ...	LSA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
558627	114	CTG ...	LSL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
548337	99	CTG ...	LTS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
550311	42	CTG ...	LRT ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
546399	48	GTG ...	VQV ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
510795	45	ATG ...	MPC ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
553511	60	ATG ...	MDR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
548279	45	ATG ...	MCT ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
548703	111	CTG ...	LSL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
548596	54	ATG ...	MQQ ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
556039	111	TTG ...	LTH ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
547239	51	CTG ...	LVL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
550243	39	ATG ...	MKL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
547958	51	ATG ...	MVC ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
555967	63	ATG ...	MKL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
552674	45	TTG ...	LTH ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
557498	231	TTG ...	LTT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
545924	33	TTG ...	LCL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
545520	120	ATG ...	MRQ ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
547557	30	GTG ...	VIL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
555994	48	CTG ...	LLE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
558466	189	ATG ...	MPI ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
550789	69	ATG ...	MLQ ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
548698	63	ATG ...	MRW ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
555396	222	ATG ...	MNL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
982	36	ATG ...	MKL ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
558337	54	ATG ...	MLL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
549144	30	TTG ...	LRT ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
556816	48	GTG ...	VER ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
555066	123	ATG ...	MRQ ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
545812	93	ATG ...	MFW ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
550615	54	CTG ...	LSS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
545580	54	GTG ...	VGK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
556163	93	CTG ...	LKQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
554817	210	CTG ...	LPY ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
553379	36	TTG ...	LVE ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
552850	39	CTG ...	LCM ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
544691	51	GTG ...	VAN ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
546914	33	CTG ...	LVI ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
554975	102	CTG ...	LTS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
549598	54	TTG ...	LVA ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
551077	33	ATG ...	MIP ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
550133	42	CTG ...	LWI ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
558437	30	CTG ...	LSI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
555476	60	ATG ...	MPC ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
550401	63	ATG ...	MSG ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
644	30	CTG ...	LTE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
556704	117	GTG ...	VQK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
555561	51	GTG ...	VET ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
553858	57	GTG ...	VGK ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
552991	30	CTG ...	LYM ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
558413	90	CTG ...	LSQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
547645	33	GTG ...	VER ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
555918	171	CTG ...	LMQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
556833	45	CTG ...	LCS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
558310	240	ATG ...	MAT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
552146	72	TTG ...	LKR ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
558647	270	CTG ...	LWP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
555777	111	ATG ...	MTQ ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
547675	42	GTG ...	VCK ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
554088	75	TTG ...	LTG ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
553587	75	CTG ...	LSA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
555844	48	CTG ...	LLC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
545011	51	TTG ...	LEI ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
555238	156	TTG ...	LKM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
552360	36	TTG ...	LLV ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
557472	168	ATG ...	MQI ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
557494	246	ATG ...	MGM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
557219	72	TTG ...	LKG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
554487	57	TTG ...	LWE ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
552858	42	ATG ...	MRS ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
553712	129	ATG ...	MRN ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
547140	96	ATG ...	MMF ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
555010	150	ATG ...	MRS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
558822	216	TTG ...	LWL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
557099	135	CTG ...	LSI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3

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