Transcript 8602 | MetamORF

Transcript

ID CARD

MetamORF ID

8602

ENSMUST00000106197

Name

Arhgdia-202

Strand

Biotype

protein_coding

Start-end positions

120578104-120581624

CDS Start-stop positions

120579231-120580371

CDS Relative positions

Sequences

Transcript sequence

CGG ...

Genome browsers

UCSC

Gene

NCBI:192662

Aliases

5330430M07Rik,
Arhgdia, ENSMUSG00000025132, Gdi-1,
MGI:2178103, NCBI:192662, OFF:Arhgdia,
rho GDI 1, Rho GDI alpha, Rho-GDI,
rho-GDI alpha, RhoDGI, RhoGDI-1

Chr 11

ORFs

32 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1289800	63	AGG ...	RNW ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
931690	30	AGG ...	RPS ...	Ribo-seq	AGG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
1696108	36	GTG ...	VER ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
1599120	66	CTG ...	LSS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF
934339	180	CTG ...	LTT ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC, MEF
8601	63	TTG ...	LTR ...	Ribo-seq	TTG	moderate	12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, v6-5
22669	276	GTG ...	VSP ...	Ribo-seq	GTG		8	sORFs_org_Mouse	CDS sORF	E14, Liver, MEF, NSC, v6-5
935234	57	AAG ...	KPP ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
975310	252	AGG ...	RRL ...	Ribo-seq	AGG	weak	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14, MEF
298427	30	CTG ...	LPQ ...	Ribo-seq	CTG	moderate	12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
20675	45	ATG ...	MQH ...	Ribo-seq	ATG		13	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
8694	33	ATG ...	MGR ...	Ribo-seq	ATG	strong	11	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	BMDC, E14, Glioma, Liver, MEF, MESC, Neutrophil, R1E, Skin_tumor, Spleen_B_cell, v6-5
1600719	192	ATG ...	MTT ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse Johnstone2016	Alternative Downstream Overlapping sORF	Glioma, Liver, MEF, MESC
932076	189	ACG ...	TTR ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
938195	30	AGG ...	RPS ...	Ribo-seq	AGG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
451918	45	TTG ...	LVR ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, MEF, Spleen_B_cell
19630	33	CTG ...	LQR ...	Ribo-seq	CTG	weak	13	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
774256	231	TTG ...	LLG ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC, MEF
936267	75	GTG ...	VEG ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC, MEF
419376	33	AGG ...	RNP ...	Ribo-seq	AGG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, C2C12, E14
309870	105	CTG ...	LGV ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF
315292	39	CTG ...	LSL ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, MEF, R1E, v6-5
8875	54	CTG ...	LTT ...	Ribo-seq	CTG	moderate	12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, v6-5
23456	45	ATG ...	MQH ...	Ribo-seq	ATG		14	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	BMDC, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
658317	33	CTG ...	LQT ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, MEF, R1E, v6-5
304901	48	GTG ...	VSQ ...	Ribo-seq	GTG	weak	10	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
448432	42	GTG ...	VRE ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, MEF, Neutrophil, Spleen_B_cell
1290675	51	AGG ...	RHA ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
303306	99	GTG ...	VES ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC, MEF
17450	45	ATG ...	MKA ...	Ribo-seq	ATG	moderate	9	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	BMDC, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, R1E, Spleen_B_cell
936998	297	AAG ...	KAA ...	Ribo-seq	AAG		1	sORFs_org_Mouse	CDS sORF	BMDC
1292176	72	AGG ...	RRS ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14

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