Transcript 555570

Transcript

ID CARD

MetamORF ID

555570

ENSMUST00000105673

Name

Park7-202

Strand

Biotype

protein_coding

Start-end positions

150897239-150909651

CDS Start-stop positions

150897311-150908407

CDS Relative positions

Sequences

Transcript sequence

CGA ...

Genome browsers

UCSC

Gene

NCBI:57320

Aliases

DJ-1,
Dj1, ENSMUSG00000028964, MGI:2135637,
NCBI:57320, OFF:Park7, Park7

Chr 4

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1231607	39	AGG ...	RFW ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1225658	36	AGG ...	RHS ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
61085	273	CTG ...	LYI ...	Ribo-seq	CTG		3	sORFs_org_Mouse	CDS sORF	3T3, Brain, Liver
147665	45	TTG ...	LDA ...	Ribo-seq	TTG	strong	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, v6-5
163104	63	ATG ...	MWW ...	Ribo-seq	ATG		6	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, NSC, v6-5
900458	45	CTG ...	LPS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
59514	30	CTG ...	LWM ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, v6-5
153127	48	TTG ...	LQA ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, v6-5
59980	186	TTG ...	LNT ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, E14, MEF, NSC, v6-5
1231609	33	AGG ...	RLG ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
157234	36	CTG ...	LGR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, v6-5
1233846	39	ATC ...	IWV ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
824532	30	ATG ...	MQG ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, v6-5
1381013	36	GTG ...	VQV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
1229951	30	ATC ...	IWV ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
516355	162	CTG ...	LGA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
1230195	33	AGG ...	RRK ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
900504	102	ATA ...	IPV ...	Ribo-seq	ATA		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1232475	75	AGG ...	RDH ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
58846	42	TTG ...	LWR ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, v6-5
154502	54	ATG ...	MWW ...	Ribo-seq	ATG		8	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, NSC, v6-5
165360	87	ATG ...	MQK ...	Ribo-seq	ATG		6	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, NSC, v6-5
1059	51	CTG ...	LLQ ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
60770	87	CTG ...	LWM ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, v6-5

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