Transcript 6067 | MetamORF

Transcript

ID CARD

MetamORF ID

6067

ENSMUST00000105287

Name

Dcn-201

Strand

Biotype

protein_coding

Start-end positions

97479609-97518143

CDS Start-stop positions

97483363-97517655

CDS Relative positions

Sequences

Transcript sequence

TTA ...

Genome browsers

UCSC

Gene

NCBI:13179

Aliases

DC,
Dcn, DSPG2, ENSMUSG00000019929,
MGI:94872, NCBI:13179, OFF:Dcn,
PG40, PGII, PGS2,
SLRR1B

Chr 10

ORFs

30 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
620119	63	GTG ...	VGV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	3T3
90123	129	CTG ...	LLG ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver
88438	126	CTG ...	LGW ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver
69517	51	TTG ...	LRA ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Liver, MEF, Testis
591778	99	CTG ...	LSG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Liver
990199	36	ATG ...	MPV ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
206054	39	ATG ...	MAT ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver
63431	48	ATG ...	MRM ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver
621825	54	TTG ...	LST ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
988603	30	GTG ...	VSS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
56834	33	CTG ...	LGW ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver
90305	78	CTG ...	LGC ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, MEF, Testis
629523	186	CTG ...	LCY ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
6066	33	CTG ...	LGL ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Skin_tumor
227618	54	GTG ...	VSM ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver
630797	48	GTG ...	VPL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
79160	87	CTG ...	LKK ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, MEF
90434	42	TTG ...	LRA ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative sORF Upstream	Liver, MEF, Testis
215654	42	CTG ...	LDH ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver
82245	36	CTG ...	LLG ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver
873403	30	ATG ...	MAV ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
90453	30	GTG ...	VAN ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative sORF Upstream	MEF, Testis
69198	39	GTG ...	VAN ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative sORF Upstream	Liver, MEF, Testis
79292	87	CTG ...	LGC ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, Liver, MEF, Testis
230270	54	ATG ...	MTS ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver
246504	39	CTG ...	LDT ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver
71584	42	ATG ...	MRS ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver
171880	33	TTG ...	LNR ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
272760	63	TTG ...	LGK ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, MEF
1595140	42	CTG ...	LWQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	MEF

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