Transcript 14819 | MetamORF

Transcript

ID CARD

MetamORF ID

14819

ENSMUST00000103172

Name

Dstn-201

Strand

Biotype

protein_coding

Start-end positions

143915320-143943324

CDS Start-stop positions

143915645-143942236

CDS Relative positions

Sequences

Transcript sequence

TCA ...

Genome browsers

UCSC

Gene

NCBI:56431

Aliases

2610043P17Rik,
ADF, AU042046, corn1,
Dsn, Dstn, ENSMUSG00000015932,
MGI:1929270, NCBI:56431, OFF:Dstn,
sid23p

Chr 2

ORFs

37 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1215954	48	AAG ...	KLE ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
733549	123	CTG ...	LPR ...	Ribo-seq	CTG		10	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, v6-5
1681184	141	ATG ...	MCH ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse Johnstone2016	Alternative Downstream sORF	Glioma, Liver, MEF, MESC
44195	30	ATG ...	MKY ...	Ribo-seq	ATG	weak	20	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, NSC, R1E, Spleen_B_cell, Testis, v6-5
14958	72	CTG ...	LKK ...	Ribo-seq	CTG	weak	22	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
1643031	135	GTG ...	VEL ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
965787	57	AAG ...	KKE ...	Ribo-seq	AAG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
14873	60	ATG ...	MSI ...	Ribo-seq	ATG	moderate	19	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, R1E, Skin_tumor, Testis, v6-5
964930	66	AAG ...	KIV ...	Ribo-seq	AAG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, MEF
969285	90	ATT ...	ILS ...	Ribo-seq	ATT	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
15969	33	TTG ...	LRP ...	Ribo-seq	TTG	moderate	22	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
412782	87	AAG ...	KFG ...	Ribo-seq	AAG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, C2C12
16596	33	GTG ...	VGT ...	Ribo-seq	GTG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, R1E, Skin_tumor, v6-5
1053543	63	CTG ...	LLS ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative sORF Upstream	E14, MEF, Neutrophil, R1E
101837	69	CTG ...	LRL ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	Brain, E14, MEF, Neutrophil
15329	54	ATG ...	MLC ...	Ribo-seq	ATG	moderate	23	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
731513	147	GTG ...	VPA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Neutrophil
14951	87	TTG ...	LSE ...	Ribo-seq	TTG	moderate	21	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
16091	84	ATG ...	MFH ...	Ribo-seq	ATG	moderate	13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, C2C12, Liver, MEF, NSC, R1E, Skin_tumor
45228	69	GTG ...	VHR ...	Ribo-seq	GTG		15	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, BMDC, Brain, C2C12, E14, Liver, MEF, Neutrophil, R1E, Testis, v6-5
976665	39	AAG ...	KLE ...	Ribo-seq	AAG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
412300	75	ACG ...	TKV ...	Ribo-seq	ACG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, C2C12, E14
15947	45	ATG ...	MTP ...	Ribo-seq	ATG	weak	21	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
964198	36	AAG ...	KRS ...	Ribo-seq	AAG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
965858	36	AAG ...	KTS ...	Ribo-seq	AAG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, MEF
14818	45	ATG ...	MGQ ...	Ribo-seq	ATG	moderate	21	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
15089	117	ATG ...	MSH ...	Ribo-seq	ATG	moderate	20	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, C2C12, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, R1E, Skin_tumor, v6-5
965121	45	TTG ...	LKD ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC, MEF, R1E, v6-5
732058	156	CTG ...	LEL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Neutrophil
48385	48	TTG ...	LKK ...	Ribo-seq	TTG	weak	17	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
44875	36	TTG ...	LRM ...	Ribo-seq	TTG	moderate	21	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
969976	102	ATC ...	ILS ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
15363	105	CTG ...	LIL ...	Ribo-seq	CTG	weak	21	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
47340	36	CTG ...	LSQ ...	Ribo-seq	CTG	weak	12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
16027	147	ATG ...	MQA ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Skin_tumor
982041	39	CTG ...	LSF ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
969972	33	CTG ...	LCR ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC, v6-5

Export data