Metam
ORF

Logo

Transcript

Transcript

ID CARD

MetamORF ID

157658

ID

ENSMUST00000102889

Name

AI314180-202

Strand

-

Biotype

protein_coding

Start-end positions

58798911-58912749

CDS Start-stop positions

58800181-58912497

CDS Relative positions

-

Sequences

Transcript sequence

GAT ...

Gene

ID

NCBI:230249

Aliases

AI314180,
AW558785, BB181316, Ecpas,
ENSMUSG00000050812, MGI:2140220, mKIAA0368,
NCBI:230249, OFF:Ecpas


Chr 4

ORFs

46 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

153152 90

ATG ...

MNS ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
163669 90

TTG ...

LTN ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF
1652201 39

ATG ...

MMD ...

Ribo-seq
ATG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
555327 99

ATG ...

MTS ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF
1657968 102

ATG ...

MLK ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1509282 36

TTG ...

LCS ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC
1655122 30

CTG ...

LCS ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
155058 99

CTG ...

LKQ ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1509354 57

ATG ...

MLT ...

Ribo-seq
ATG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC
550412 90

CTG ...

LSI ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
158367 102

ATG ...

MLK ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
548618 63

TTG ...

LCF ...

Ribo-seq
TTG moderate 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF, v6-5
1657310 36

ATG ...

MDF ...

Ribo-seq
ATG strong 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1654717 48

TTG ...

LLR ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
552758 30

CTG ...

LKF ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
1685268 78

CTG ...

LRN ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
157657 39

ATG ...

MNK ...

Ribo-seq
ATG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF
547860 51

ATG ...

MSW ...

Ribo-seq
ATG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
515326 75

CTG ...

LLK ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF
516329 72

CTG ...

LKR ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF
1510046 69

CTG ...

LPS ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC
1659348 99

CTG ...

LKQ ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
159389 108

TTG ...

LAM ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
556152 237

TTG ...

LNC ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    CDS
    sORF
3T3, Liver
545437 114

ATG ...

MVK ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
823583 42

ATG ...

MGK ...

Ribo-seq
ATG strong 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell
1655741 45

CTG ...

LRN ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
513176 33

CTG ...

LLK ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
511872 30

CTG ...

LKR ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
553743 84

GTG ...

VQG ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
552550 78

TTG ...

LPQ ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
558356 120

TTG ...

LFQ ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
557622 105

TTG ...

LFL ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF
555491 78

TTG ...

LCS ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
1658462 45

ATG ...

MIL ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
545180 63

TTG ...

LGW ...

Ribo-seq
TTG strong 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
513539 33

TTG ...

LIP ...

Ribo-seq
TTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver, R1E
549127 36

TTG ...

LLS ...

Ribo-seq
TTG moderate 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, MEF
1508890 54

CTG ...

LTS ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC
1508949 42

CTG ...

LSK ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC
552180 30

CTG ...

LYG ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
551579 33

CTG ...

LTL ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
1657886 108

TTG ...

LAM ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1378183 30

ATG ...

MQI ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF
549276 63

TTG ...

LFL ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF
556197 42

ATG ...

MHW ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5