Transcript 72494 | MetamORF

Transcript

ID CARD

MetamORF ID

72494

ENSMUST00000102746

Name

Uba2-201

Strand

Biotype

protein_coding

Start-end positions

34140688-34168575

CDS Start-stop positions

34141285-34168510

CDS Relative positions

Sequences

Transcript sequence

CGA ...

Genome browsers

UCSC

Gene

NCBI:50995

Aliases

AA986091,
Arx, ENSMUSG00000052997, MGI:1858313,
NCBI:50995, OFF:Uba2, Sae2,
UBA1, Uba2, Ubl1a2,
Uble1b

Chr 7

ORFs

89 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1258808	108	ACG ...	TET ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1259471	135	AAG ...	KLE ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1258824	195	ATC ...	IKK ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
74278	75	TTG ...	LAR ...	Ribo-seq	TTG		10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, MEF, R1E, Testis, v6-5
1675360	189	CTG ...	LVL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Overlapping sORF Upstream	MEF, R1E
600170	87	CTG ...	LSS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, R1E
589460	57	GTG ...	VHW ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain
1254167	135	ACG ...	TKK ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
597244	54	GTG ...	VSC ...	Ribo-seq	GTG		10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, MEF, R1E, v6-5
914591	57	ATC ...	ICC ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
424187	72	TTG ...	LCQ ...	Ribo-seq	TTG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, NSC, Spleen_B_cell
599394	114	ATG ...	MKT ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, NSC
422897	36	GTG ...	VKI ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, Neutrophil, v6-5
426624	261	ATG ...	MPV ...	Ribo-seq	ATG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
1253631	96	ATA ...	ISS ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
77801	153	TTG ...	LIW ...	Ribo-seq	TTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
1255031	96	ACG ...	TTR ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
601936	159	CTG ...	LLG ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, NSC, v6-5
426750	117	CTG ...	LKK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
1258938	207	AGG ...	RKM ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1258513	108	AAG ...	KRE ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
426780	93	CTG ...	LKM ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Spleen_B_cell
1252608	66	ATA ...	ISA ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
424904	255	GTG ...	VPK ...	Ribo-seq	GTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
600642	138	CTG ...	LKL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, NSC, v6-5
592304	168	GTG ...	VRR ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, Brain, MEF, R1E
425545	171	CTG ...	LTL ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, Spleen_B_cell, v6-5
601126	93	ATG ...	MEL ...	Ribo-seq	ATG		5	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, E14, Glioma, Liver, MEF, MESC, R1E, v6-5
424969	63	CTG ...	LKC ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Spleen_B_cell
1260211	189	AAG ...	KCL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
424478	33	GTG ...	VPL ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, NSC
425388	87	ATG ...	MLP ...	Ribo-seq	ATG		3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC, Spleen_B_cell
1258641	51	GTG ...	VSC ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, MEF
423130	108	CTG ...	LCT ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, Spleen_B_cell, v6-5
600819	63	GTG ...	VGS ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, MEF, v6-5
425598	165	CTG ...	LRL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Spleen_B_cell, v6-5
3944	48	CTG ...	LQR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1318218	36	ATG ...	MPI ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC
72493	57	GTG ...	VCS ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Liver, R1E, Testis, v6-5
1256460	51	ACG ...	TAA ...	Ribo-seq	ACG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
425027	234	GTG ...	VKF ...	Ribo-seq	GTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
589696	57	CTG ...	LQW ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, R1E
426151	201	ATG ...	MLI ...	Ribo-seq	ATG		10	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, Spleen_B_cell, v6-5
425904	72	TTG ...	LAR ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF, Spleen_B_cell, v6-5
423850	72	ATG ...	MLI ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil
1258542	141	AGG ...	RLK ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1258225	72	ATA ...	IRT ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
595785	36	CTG ...	LLQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
76570	57	CTG ...	LPV ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, R1E
1254941	69	AAG ...	KRM ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1814885	48	ATG ...	MRV ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
425304	84	CTG ...	LPK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
1743919	51	CTG ...	LMC ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
533933	69	CTG ...	LIK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1258321	150	ATC ...	IWT ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1260233	93	AAG ...	KPI ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
532708	81	CTG ...	LLR ...	Ribo-seq	CTG	weak	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, NSC, Spleen_B_cell, v6-5
1258928	162	AGG ...	RLL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1259929	99	AGG ...	RGM ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1258081	66	ACG ...	TTH ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1256652	129	AAG ...	KKE ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
597274	54	TTG ...	LLW ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, MEF, R1E
1257850	87	ATA ...	ITP ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
76944	69	ATG ...	MSA ...	Ribo-seq	ATG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, Neutrophil, R1E, Testis, v6-5
424890	198	CTG ...	LIK ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
1254221	48	ATC ...	ILP ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
74349	144	TTG ...	LIQ ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, R1E, v6-5
4497	42	CTG ...	LAQ ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, NSC
1253974	48	ATT ...	ILL ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
425785	126	GTG ...	VTA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
426524	213	TTG ...	LER ...	Ribo-seq	TTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
72731	69	TTG ...	LPK ...	Ribo-seq	TTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, R1E, Testis, v6-5
598149	69	CTG ...	LIL ...	Ribo-seq	CTG	weak	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, R1E, v6-5
77543	135	ATG ...	MSA ...	Ribo-seq	ATG		12	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
425684	72	TTG ...	LPT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
72713	63	ATG ...	MRL ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC, R1E
590486	63	TTG ...	LEL ...	Ribo-seq	TTG	strong	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, R1E, v6-5
590033	66	GTG ...	VGS ...	Ribo-seq	GTG		9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, MEF, R1E, v6-5
426039	165	GTG ...	VRR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Spleen_B_cell
1257548	60	AGG ...	RLP ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1255214	141	ATT ...	IQT ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1250691	84	ATC ...	IWT ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
223868	87	TTG ...	LIW ...	Ribo-seq	TTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, MEF, Neutrophil, NSC, R1E, v6-5
589551	36	ATG ...	MSK ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC
1256448	48	ATG ...	MCL ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC
426616	180	CTG ...	LTE ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, NSC, Spleen_B_cell, v6-5
593590	45	TTG ...	LLH ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
530951	84	TTG ...	LER ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil
426857	129	TTG ...	LVT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell

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