Transcript 449771

Transcript

ID CARD

MetamORF ID

449771

ENSMUST00000102743

Name

Rapgef6-203

Strand

Biotype

protein_coding

Start-end positions

54522847-54699285

CDS Start-stop positions

54523050-54696105

CDS Relative positions

Sequences

Transcript sequence

GTT ...

Genome browsers

UCSC

Gene

NCBI:192786

Aliases

A530068K01,
AI844632, BB085664, C030018K18Rik,
ENSMUSG00000037533, MGI:2384761, mKIAA4052,
NCBI:192786, OFF:Rapgef6, PDZ-GEF2,
Pdzgef2, RA-GEF-2, Ragef2,
Rapgef6

Chr 11

ORFs

11 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
19520	36	CTG ...	LAY ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	sORF Upstream	3T3
18747	42	GTG ...	VGL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF Upstream	3T3
453489	99	TTG ...	LRR ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF Upstream	3T3
450401	96	TTG ...	LLE ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
646964	33	CTG ...	LGG ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Neutrophil
450435	75	TTG ...	LDP ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	sORF Upstream	3T3
449770	60	CTG ...	LAS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Spleen_B_cell
450431	30	CTG ...	LEN ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
657800	48	ATG ...	MGW ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
449876	81	TTG ...	LSL ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	sORF Upstream	3T3
446908	102	CTG ...	LRQ ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3

Export data