Transcript 293197

Transcript

ID CARD

MetamORF ID

293197

ENSMUST00000102611

Name

Myh10-203

Strand

Biotype

protein_coding

Start-end positions

68691915-68816632

CDS Start-stop positions

68699241-68815071

CDS Relative positions

Sequences

Transcript sequence

GGT ...

Genome browsers

UCSC

Gene

NCBI:77579

Aliases

5730504C04Rik,
9330167F11Rik, ENSMUSG00000020900, Fltn,
MGI:1930780, mKIAA3005, Myh10,
Myhn-2, Myhn2, NCBI:77579,
NMHC II-B, NMHC-B, NMHCII-B,
NMMHC II-b, NMMHC-B, NMMHC-IIB,
OFF:Myh10, SMemb

Chr 11

ORFs

48 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
308641	93	CTG ...	LTP ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
306031	183	CTG ...	LSS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
311383	54	CTG ...	LDL ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
644084	54	TTG ...	LPT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1600774	69	ATG ...	MTW ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
309182	36	CTG ...	LGT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
294779	48	CTG ...	LWS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
652513	75	ATG ...	MTT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
658254	126	ATG ...	MCQ ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
316083	81	TTG ...	LRR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
658186	126	CTG ...	LPK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
301280	39	ATG ...	MKL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
293196	54	ATG ...	MTS ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
1286952	30	ATG ...	MAN ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1695056	33	TTG ...	LLN ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
659512	39	ATG ...	MRR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, MEF
655000	138	ATG ...	MSW ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
308076	156	CTG ...	LTG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
652831	105	TTG ...	LGP ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF
659798	189	ATG ...	MQR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
657224	147	GTG ...	VCR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, MEF
644581	45	TTG ...	LRM ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
299462	168	CTG ...	LPL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
658833	111	TTG ...	LLL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
640029	54	TTG ...	LSL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
657503	120	TTG ...	LPT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
313518	66	CTG ...	LVS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
646956	111	ATG ...	MHL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
300481	48	TTG ...	LDR ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, MEF
658978	93	ATG ...	MTS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
1339235	45	CTG ...	LCG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
646864	48	CTG ...	LKR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
294253	132	ATG ...	MRH ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
311213	39	CTG ...	LLG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
996757	123	CTG ...	LKR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, MEF
307982	33	GTG ...	VRT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1123517	33	TTG ...	LWL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
657556	129	TTG ...	LLP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
310565	45	TTG ...	LLL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
296297	135	ATG ...	MMR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
649692	99	TTG ...	LHG ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1597952	63	TTG ...	LNG ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1696683	138	ATG ...	MTS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
1696331	42	ATG ...	MRF ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
295578	225	CTG ...	LDW ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
304832	195	TTG ...	LWT ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
647915	159	CTG ...	LLA ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
654553	165	GTG ...	VVA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, MEF

Export data