Transcript 31219 | MetamORF

Transcript

ID CARD

MetamORF ID

31219

ENSMUST00000100775

Name

Rad1-202

Strand

Biotype

protein_coding

Start-end positions

10486069-10499063

CDS Start-stop positions

10486519-10496059

CDS Relative positions

Sequences

Transcript sequence

CTA ...

Genome browsers

UCSC

Gene

NCBI:19355

Aliases

ENSMUSG00000022248,
MGI:1316678, mRAD1, NCBI:19355,
OFF:Rad1, Rad1

Chr 15

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
358848	39	CTG ...	LFI ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, R1E
1142585	90	GTG ...	VFC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
1143707	45	CTG ...	LRR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E, v6-5
1144826	42	GTG ...	VCA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
363327	60	CTG ...	LTC ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, R1E, v6-5
366702	96	ATG ...	MQS ...	Ribo-seq	ATG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, R1E, Spleen_B_cell, v6-5
471275	30	ATG ...	MKR ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E, Spleen_B_cell, v6-5
364769	132	TTG ...	LLP ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, R1E, v6-5
1144803	33	TTG ...	LTT ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, R1E, v6-5
32869	150	CTG ...	LAP ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, E14, R1E, Spleen_B_cell, Testis, v6-5
31739	33	GTG ...	VFL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	Testis
358732	42	TTG ...	LSF ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, R1E, v6-5
364065	87	GTG ...	VCK ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, R1E, Spleen_B_cell, v6-5
473205	135	CTG ...	LCG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Overlapping sORF Upstream	Spleen_B_cell
1142236	99	GTG ...	VVA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	v6-5
31955	66	TTG ...	LPG ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	Testis, v6-5
469618	90	GTG ...	VLP ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	R1E, Spleen_B_cell, v6-5
473418	147	CTG ...	LFI ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	E14, R1E, Spleen_B_cell, v6-5
365297	90	CTG ...	LQA ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Brain, E14, MEF, R1E, Spleen_B_cell, v6-5
1143253	87	CTG ...	LNG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	v6-5
31775	57	TTG ...	LLA ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	Testis, v6-5
366949	75	ATG ...	MPL ...	Ribo-seq	ATG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, R1E, Spleen_B_cell, v6-5
1144064	42	CTG ...	LRF ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E, v6-5
33049	120	GTG ...	VRR ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, E14, MEF, R1E, Spleen_B_cell, Testis, v6-5
33059	129	GTG ...	VAA ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, E14, MEF, R1E, Spleen_B_cell, Testis, v6-5
31218	30	GTG ...	VAG ...	Ribo-seq	GTG	strong	8	sORFs_org_Mouse	Alternative sORF Upstream	MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5

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