Transcript 8811 | MetamORF

Transcript

ID CARD

MetamORF ID

8811

ENSMUST00000100528

Name

Ube2z-201

Strand

Biotype

protein_coding

Start-end positions

96047432-96065388

CDS Start-stop positions

96050244-96065274

CDS Relative positions

Sequences

Transcript sequence

CGG ...

Genome browsers

UCSC

Gene

NCBI:268470

Aliases

AW049199,
C030047H17Rik, D11Moh35, ENSMUSG00000014349,
MGI:1343160, NCBI:268470, OFF:Ube2z,
Ube2z

Chr 11

ORFs

38 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
22242	117	CTG ...	LRI ...	Ribo-seq	CTG		12	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, R1E, Spleen_B_cell, Testis, v6-5
775508	72	GTG ...	VGT ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	sORF Upstream	B_cell
20205	45	CTG ...	LGR ...	Ribo-seq	CTG	strong	14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
452484	60	CTG ...	LEP ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell
20073	69	TTG ...	LGP ...	Ribo-seq	TTG	moderate	14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
451779	69	ATG ...	MKM ...	Ribo-seq	ATG	moderate	14	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, Glioma, Liver, MEF, MESC, NSC, R1E, Spleen_B_cell, v6-5
1292111	45	ATA ...	IAA ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
937624	81	ATC ...	IAC ...	Ribo-seq	ATC		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
1290500	51	AGG ...	RWP ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1295383	96	AGG ...	RWP ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
452937	33	CTG ...	LGQ ...	Ribo-seq	CTG	moderate	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, Liver, MEF, NSC, R1E, Spleen_B_cell
652907	75	ATG ...	MKG ...	Ribo-seq	ATG	weak	7	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Glioma, Liver, MEF, MESC, R1E
449526	57	CTG ...	LPG ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, R1E, Spleen_B_cell, v6-5
659717	282	CTG ...	LLC ...	Ribo-seq	CTG		7	sORFs_org_Mouse	CDS sORF	3T3, Brain, E14, Liver, MEF, R1E, v6-5
20701	48	CTG ...	LIA ...	Ribo-seq	CTG	moderate	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
1341713	108	GTG ...	VGG ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1287280	51	ATA ...	IRS ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
18703	60	CTG ...	LKW ...	Ribo-seq	CTG	moderate	14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
299903	54	ATG ...	MRW ...	Ribo-seq	ATG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, Spleen_B_cell, v6-5
934511	48	AGG ...	RSL ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
449714	66	CTG ...	LVG ...	Ribo-seq	CTG	strong	6	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, MEF, Spleen_B_cell
639690	36	CTG ...	LTI ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, MEF, R1E
1293008	66	ATT ...	IMT ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1291655	30	AGG ...	RNV ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1293650	111	ATT ...	IMT ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
313317	99	ATG ...	MRW ...	Ribo-seq	ATG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, R1E, Spleen_B_cell, v6-5
448634	39	ATG ...	MYP ...	Ribo-seq	ATG	weak	13	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Glioma, Liver, MEF, MESC, NSC, R1E, Spleen_B_cell, v6-5
8810	42	CTG ...	LRI ...	Ribo-seq	CTG		15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
300765	63	ATG ...	MTS ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, R1E, Spleen_B_cell, v6-5
21146	63	ATG ...	MLK ...	Ribo-seq	ATG	moderate	13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
652703	87	TTG ...	LTL ...	Ribo-seq	TTG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, R1E
21813	48	ATG ...	MNV ...	Ribo-seq	ATG	moderate	15	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, R1E, Spleen_B_cell, Testis, v6-5
935398	36	CTG ...	LLE ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, MEF
930809	36	ATC ...	IAC ...	Ribo-seq	ATC		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
453188	42	TTG ...	LER ...	Ribo-seq	TTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, R1E, Spleen_B_cell, v6-5
448369	75	GTG ...	VDW ...	Ribo-seq	GTG	moderate	9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
313892	108	ATG ...	MTS ...	Ribo-seq	ATG		8	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, R1E, Spleen_B_cell, v6-5
450484	63	CTG ...	LAL ...	Ribo-seq	CTG	strong	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, R1E, Spleen_B_cell

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