Transcript 1612 | MetamORF

Transcript

ID CARD

MetamORF ID

1612

ENSMUST00000100507

Name

Eif3b-201

Strand

Biotype

protein_coding

Start-end positions

140419328-140443360

CDS Start-stop positions

140419361-140442423

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

NCBI:27979

Aliases

AL033316,
AL033334, AL033369, AW208965,
D5Wsu45e, EIF3-ETA, EIF3-P110,
EIF3-P116, Eif3b, Eif3s9,
ENSMUSG00000056076, MGI:106478, NCBI:27979,
OFF:Eif3b, PRT1

Chr 5

ORFs

53 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1238028	66	ATG ...	MAV ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	BMDC, E14, Glioma, Liver, MEF, MESC
574112	183	TTG ...	LNG ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, v6-5
521891	114	CTG ...	LER ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
1239852	54	TTG ...	LPC ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
1238384	177	AGG ...	RTL ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1738440	96	ATG ...	MSG ...	Ribo-seq	ATG		2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
2002	42	ATG ...	MCK ...	Ribo-seq	ATG		14	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, Liver, MEF, Skin_tumor, Spleen_B_cell, Testis, v6-5
574646	186	ATG ...	MLN ...	Ribo-seq	ATG		4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, E14, Glioma, Liver, MEF, MESC, v6-5
561330	57	TTG ...	LRN ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF
522175	48	CTG ...	LAA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Neutrophil, v6-5
2319	66	CTG ...	LAE ...	Ribo-seq	CTG		16	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, Skin_tumor, Spleen_B_cell, Testis, v6-5
569949	48	ATG ...	MYS ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, E14, Glioma, Liver, MEF, MESC, v6-5
519693	171	CTG ...	LRT ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Spleen_B_cell
566605	54	TTG ...	LVM ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, MEF, v6-5
520825	54	ATG ...	MWL ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC, Spleen_B_cell, v6-5
832252	201	GTG ...	VRS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell
561455	51	GTG ...	VMY ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, MEF, v6-5
1238345	57	GTG ...	VVT ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
572063	129	ATG ...	MTL ...	Ribo-seq	ATG		3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, E14, Glioma, Liver, MEF, MESC
518547	66	ATG ...	MLN ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, Neutrophil, NSC, v6-5
518023	144	TTG ...	LAS ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Spleen_B_cell
523389	210	TTG ...	LQS ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, v6-5
1311027	48	CTG ...	LHR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1311819	36	ATG ...	MSP ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
574552	87	ATG ...	MTI ...	Ribo-seq	ATG		12	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, Glioma, Liver, MEF, MESC, v6-5
906120	111	ATC ...	ISG ...	Ribo-seq	ATC		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
561460	117	ATG ...	MLT ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, v6-5
832429	42	GTG ...	VPW ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Liver, MEF
1310890	39	GTG ...	VRP ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
1234952	81	TTG ...	LPG ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
572871	129	CTG ...	LES ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, v6-5
573516	75	CTG ...	LRR ...	Ribo-seq	CTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, Liver, MEF, v6-5
178659	33	ATG ...	MDR ...	Ribo-seq	ATG	strong	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
1242000	153	ACG ...	TCA ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1241136	81	ATT ...	ITL ...	Ribo-seq	ATT		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
61624	72	CTG ...	LGG ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Testis
1236937	84	ACG ...	TSL ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
572203	168	CTG ...	LAA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, v6-5
516714	87	ATG ...	MGA ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, Spleen_B_cell
1611	78	TTG ...	LQA ...	Ribo-seq	TTG		16	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, Skin_tumor, Spleen_B_cell, Testis, v6-5
518541	63	TTG ...	LNG ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, Neutrophil, NSC, v6-5
1241649	66	ACG ...	TER ...	Ribo-seq	ACG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
518388	48	TTG ...	LIA ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Spleen_B_cell, v6-5
516688	168	CTG ...	LLP ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Spleen_B_cell
1433338	42	ATG ...	MSS ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC
871886	69	TTG ...	LTS ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, v6-5
62018	90	TTG ...	LQS ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, MEF, Neutrophil, NSC, v6-5
519997	90	CTG ...	LMG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
1662387	30	TTG ...	LST ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
519963	78	CTG ...	LGR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1736907	57	ATG ...	MTI ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
1310822	42	ATG ...	MVR ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
183474	75	CTG ...	LRR ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Spleen_B_cell

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