Transcript 30885 | MetamORF

Transcript

ID CARD

MetamORF ID

30885

ENSMUST00000100375

Name

Poldip3-202

Strand

Biotype

protein_coding

Start-end positions

83125978-83149331

CDS Start-stop positions

83127881-83149253

CDS Relative positions

Sequences

Transcript sequence

CCG ...

Genome browsers

UCSC

Gene

NCBI:73826

Aliases

1110008P04Rik,
AA408269, AL022852, C77954,
ENSMUSG00000041815, MGI:1921076, mKIAA1649,
NCBI:73826, OFF:Poldip3, PDIP46,
Poldip3, SKAR

Chr 15

ORFs

43 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
30896	231	GTG ...	VSG ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Spleen_B_cell
30898	105	ATG ...	MLG ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, BMDC, Glioma, Liver, MEF, MESC, Spleen_B_cell
32654	210	GTG ...	VSG ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Spleen_B_cell
947768	60	AGG ...	RMT ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
11690	87	GTG ...	VSK ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Spleen_B_cell
473668	60	ATG ...	MTP ...	Ribo-seq	ATG		9	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	B_cell, Glioma, Liver, MEF, MESC, Neutrophil, R1E, Spleen_B_cell, v6-5
32517	177	TTG ...	LLT ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Spleen_B_cell
31488	78	CTG ...	LCV ...	Ribo-seq	CTG	weak	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
691172	90	TTG ...	LIF ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, NSC, R1E, v6-5
363193	81	CTG ...	LPL ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, R1E, Spleen_B_cell, v6-5
32995	39	ATG ...	MSS ...	Ribo-seq	ATG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, MEF, R1E, Spleen_B_cell, Testis, v6-5
362053	63	CTG ...	LPK ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, R1E, Spleen_B_cell, v6-5
1538166	36	CTG ...	LFS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
31676	117	TTG ...	LGS ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Spleen_B_cell
469679	54	ATG ...	MTW ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, Glioma, Liver, MEF, MESC, Spleen_B_cell
470599	54	CTG ...	LCP ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Spleen_B_cell
948811	42	AAG ...	KMM ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
949127	42	AGG ...	RNW ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
32598	135	TTG ...	LTP ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Spleen_B_cell
948545	51	ACG ...	TPG ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
473167	45	ATG ...	MEM ...	Ribo-seq	ATG		7	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, E14, Glioma, Liver, MEF, MESC, R1E, Spleen_B_cell, v6-5
362554	36	ATG ...	MTL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Spleen_B_cell
470169	45	ATG ...	MKM ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Spleen_B_cell
472223	57	ATG ...	MTP ...	Ribo-seq	ATG		9	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
473426	48	CTG ...	LLI ...	Ribo-seq	CTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
30910	216	TTG ...	LEV ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Spleen_B_cell
472376	45	CTG ...	LLI ...	Ribo-seq	CTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
949176	132	ACG ...	TPD ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
30884	72	GTG ...	VWR ...	Ribo-seq	GTG	weak	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
947879	183	ATA ...	IVL ...	Ribo-seq	ATA	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
471190	48	GTG ...	VCV ...	Ribo-seq	GTG	weak	11	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
1537966	54	ATG ...	MMP ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC, R1E
32005	195	TTG ...	LES ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Spleen_B_cell
11808	78	ATG ...	MPG ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Spleen_B_cell
362206	48	CTG ...	LTP ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, R1E, Spleen_B_cell, v6-5
472283	42	GTG ...	VAL ...	Ribo-seq	GTG	moderate	10	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, E14, Liver, MEF, Neutrophil, Spleen_B_cell, v6-5
1180104	51	ATG ...	MPT ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, R1E
471774	39	ATG ...	MMT ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Spleen_B_cell
357380	33	CTG ...	LCL ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, E14, NSC, R1E, Spleen_B_cell
366337	33	TTG ...	LQP ...	Ribo-seq	TTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, R1E, Spleen_B_cell
355284	30	TTG ...	LWC ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Spleen_B_cell
1351874	78	GTG ...	VQP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
950326	63	AGG ...	RMT ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC

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