Transcript 292994

Transcript

ID CARD

MetamORF ID

292994

ENSMUST00000092912

Name

Mettl16-202

Strand

Biotype

nonsense_mediated_decay

Start-end positions

74770925-74817894

CDS Start-stop positions

74773522-74795814

CDS Relative positions

Sequences

Transcript sequence

GTG ...

Genome browsers

UCSC

Gene

NCBI:67493

Aliases

2610100D03Rik,
2810013M15Rik, A830095F14Rik, AI846133,
ENSMUSG00000010554, Mett10d, Mettl16,
MGI:1914743, NCBI:67493, OFF:Mettl16

Chr 11

ORFs

27 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
305406	189	CTG ...	LTC ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, E14, MEF, v6-5
294466	168	CTG ...	LDG ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, v6-5
306991	60	TTG ...	LMN ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, E14, v6-5
298094	96	CTG ...	LAT ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, E14, MEF, v6-5
301363	144	CTG ...	LFK ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, v6-5
311403	105	CTG ...	LMD ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, v6-5
312261	78	TTG ...	LIG ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, MEF, v6-5
648140	51	TTG ...	LVT ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
304115	99	GTG ...	VVE ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, v6-5
299258	138	TTG ...	LER ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, E14, MEF, v6-5
302116	84	GTG ...	VDD ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, E14, MEF, v6-5
292993	66	CTG ...	LAS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, E14, MEF, v6-5
770349	66	CTG ...	LHL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, v6-5
650169	87	ATG ...	MQE ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, v6-5
1125421	174	CTG ...	LRE ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, v6-5
649551	63	CTG ...	LGR ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF, v6-5
652786	57	CTG ...	LTS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
1601317	39	TTG ...	LYS ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF
1290126	57	ATG ...	MTV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Downstream NMD sORF	E14
304271	129	GTG ...	VKV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, v6-5
1125871	111	TTG ...	LRL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, v6-5
300202	123	GTG ...	VPQ ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, v6-5
1286788	114	AAG ...	KTL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
1597294	39	GTG ...	VFQ ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF
308888	66	ATG ...	MAG ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, MEF
653153	30	CTG ...	LVF ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF, v6-5
1123076	105	ATG ...	MCS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	v6-5

Export data