Transcript 398926

Transcript

ID CARD

MetamORF ID

398926

ENSMUST00000092096

Name

Usp14-201

Strand

Biotype

protein_coding

Start-end positions

9995432-10030141

CDS Start-stop positions

9996097-10029928

CDS Relative positions

Sequences

Transcript sequence

GCT ...

Genome browsers

UCSC

Gene

NCBI:59025

Aliases

2610005K12Rik,
2610037B11Rik, AW107924, ax,
C78769, ENSMUSG00000047879, MGI:1928898,
NCBI:59025, nmf375, OFF:Usp14,
Usp14

Chr 18

ORFs

37 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
486694	48	CTG ...	LCL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, Spleen_B_cell
1867292	195	CTG ...	LFF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
13744	72	ATG ...	MLQ ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell, v6-5
394677	45	TTG ...	LAP ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E
396411	66	CTG ...	LHT ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Liver, MEF, R1E, Spleen_B_cell, v6-5
393939	120	TTG ...	LIP ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF, R1E
1155244	42	TTG ...	LLM ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E
394371	66	TTG ...	LSD ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF, R1E
400423	111	ATG ...	MSF ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, R1E, v6-5
400286	144	TTG ...	LIP ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, MEF, R1E, Spleen_B_cell
397091	153	ATG ...	MRL ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, MEF, Neutrophil, R1E
400010	57	TTG ...	LLT ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E, v6-5
958941	78	ATA ...	IFC ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
399509	165	CTG ...	LQL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, R1E
398261	42	TTG ...	LQR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, R1E
958362	42	AGG ...	RED ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
398397	66	ATG ...	MNS ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, R1E, Spleen_B_cell
393808	132	CTG ...	LPP ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF, Neutrophil, R1E
397750	36	CTG ...	LGK ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E
486109	45	TTG ...	LLH ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
398925	105	ATG ...	MTR ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, MEF, Neutrophil, R1E, v6-5
396128	54	CTG ...	LDT ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E, v6-5
400131	120	TTG ...	LFV ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, R1E, v6-5
396564	90	TTG ...	LLR ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, MEF, Neutrophil, R1E
715583	57	GTG ...	VET ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E
392472	30	CTG ...	LPR ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, Brain, MEF, Neutrophil, R1E
399138	54	CTG ...	LTI ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E
397673	72	ATG ...	MCM ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, R1E, Spleen_B_cell
393436	72	CTG ...	LPL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, MEF, R1E
394298	57	ATG ...	MLD ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E, v6-5
399191	72	ATG ...	MNP ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, R1E, v6-5
1155869	36	ATG ...	MFY ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E
716040	63	CTG ...	LVV ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E
397374	96	ATG ...	MLS ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, R1E, Spleen_B_cell, v6-5
714673	60	GTG ...	VVE ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E
400060	66	TTG ...	LQR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Spleen_B_cell
1156213	45	CTG ...	LAH ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E

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