Transcript 394794

Transcript

ID CARD

MetamORF ID

394794

ENSMUST00000091920

Name

Rbm27-202

Strand

Biotype

protein_coding

Start-end positions

42275353-42341542

CDS Start-stop positions

42275534-42338475

CDS Relative positions

Sequences

Transcript sequence

TAG ...

Genome browsers

UCSC

Gene

NCBI:225432

Aliases

A730010I06,
AI043120, ENSMUSG00000024491, MGI:2147194,
mKIAA1311, NCBI:225432, OFF:Rbm27,
Psc1, Rbm27

Chr 18

ORFs

69 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
714645	84	CTG ...	LKH ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, v6-5
396291	48	GTG ...	VYL ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, v6-5
1361384	33	ATG ...	MFK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
716783	45	ATG ...	MKM ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Downstream Overlapping sORF	3T3
1155702	54	GTG ...	VED ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
1199847	228	AAG ...	KMS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
1154592	42	TTG ...	LRR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
1631777	30	TTG ...	LLM ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
803448	144	GTG ...	VNE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
1197519	63	ATT ...	IKN ...	Ribo-seq	ATT		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1361011	84	TTG ...	LWT ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
40017	33	ATG ...	MPG ...	Ribo-seq	ATG	moderate	8	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC, Brain, E14, MEF, Neutrophil, v6-5
802048	36	CTG ...	LRP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
1197869	165	ATG ...	MPS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
715746	63	ATG ...	MMM ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Downstream Overlapping sORF	3T3, MEF
399291	66	ATG ...	MPS ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, MEF, v6-5
399369	72	ATG ...	MWM ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, v6-5
1196676	75	ATT ...	ICF ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Downstream Overlapping sORF	E14
395965	69	TTG ...	LKV ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14
713814	81	GTG ...	VIQ ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
715683	60	ATG ...	MSN ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14
802614	57	GTG ...	VKS ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	sORF Upstream	MEF, Neutrophil, v6-5
717985	123	CTG ...	LRP ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, B_cell, E14, v6-5
714676	51	CTG ...	LSS ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, v6-5
485623	36	GTG ...	VGQ ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	sORF Upstream	3T3, MEF, Neutrophil, v6-5
1198952	33	CTG ...	LFQ ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1362071	36	CTG ...	LGF ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1198228	36	AGG ...	RKK ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
713577	51	ATG ...	MKM ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Downstream Overlapping sORF	3T3
1199712	234	AGG ...	RKK ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
1199455	291	ATC ...	ITW ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
1198988	81	AAG ...	KHL ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
712654	54	ATG ...	MMK ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Downstream Overlapping sORF	3T3, MEF
1199793	60	AAG ...	KTT ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
801677	129	GTG ...	VRR ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
802118	51	ATG ...	MTG ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
802036	39	ATG ...	MQV ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
801568	33	CTG ...	LEK ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, v6-5
1198151	90	ATA ...	IIL ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1199739	150	ATA ...	ISP ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
1156267	69	CTG ...	LLI ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
1196951	171	ATG ...	MWM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1198767	54	AAG ...	KTT ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1196813	63	ATA ...	ISP ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
715646	96	ATG ...	MAI ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell
1197832	63	ATA ...	ILS ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
802459	111	ATG ...	MAS ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, v6-5
714406	39	ATG ...	MNM ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Downstream Overlapping sORF	3T3, E14
1155860	48	CTG ...	LNH ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, v6-5
717031	39	ATG ...	MFK ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14
485205	60	ATG ...	MMM ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Downstream Overlapping sORF	3T3, E14, MEF
1196394	93	ATC ...	ITW ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
397351	39	GTG ...	VTF ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, v6-5
714163	36	CTG ...	LGH ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
801268	93	ATG ...	MSG ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, v6-5
1199572	36	ATC ...	IWR ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
713790	45	ATG ...	MKR ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
712937	36	ATG ...	MMF ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14
801311	72	ATG ...	MSC ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, v6-5
716969	42	ATG ...	MMF ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
713175	60	CTG ...	LVD ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, v6-5
394793	42	TTG ...	LVT ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, v6-5
803223	252	GTG ...	VED ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	v6-5
715619	57	ATG ...	MMM ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Downstream Overlapping sORF	3T3, E14, MEF
1198370	33	ATC ...	IWR ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
713820	105	ATG ...	MNQ ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
803422	240	TTG ...	LRR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	v6-5
1154450	60	TTG ...	LSS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
1199524	87	ATC ...	IRL ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14

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