Transcript 145946

Transcript

ID CARD

MetamORF ID

145946

ENSMUST00000091614

Name

Nfx1-202

Strand

Biotype

protein_coding

Start-end positions

40970906-41012608

CDS Start-stop positions

40971035-41011535

CDS Relative positions

Sequences

Transcript sequence

GCA ...

Genome browsers

UCSC

Gene

NCBI:74164

Aliases

1300017N15Rik,
3000003M19Rik, ENSMUSG00000028423, MGI:1921414,
NCBI:74164, NFX.1, Nfx1,
OFF:Nfx1, TEG-42, Tex42

Chr 4

ORFs

75 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1429401	42	TTG ...	LSS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF
153975	267	TTG ...	LAE ...	Ribo-seq	TTG	strong	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, v6-5
1658521	168	CTG ...	LAR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1659102	195	GTG ...	VVR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1084706	84	ATG ...	MHG ...	Ribo-seq	ATG		2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, v6-5
509625	78	GTG ...	VAA ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
515349	108	GTG ...	VPW ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
1176774	48	CTG ...	LWK ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, v6-5
548230	48	TTG ...	LSA ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
160279	195	CTG ...	LFI ...	Ribo-seq	CTG	weak	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, v6-5
1083654	105	CTG ...	LLL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, v6-5
1084181	138	CTG ...	LHQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
1080944	36	GTG ...	VWQ ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, v6-5
511933	60	ATG ...	MCC ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, v6-5
823787	72	ATG ...	MKE ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
513060	51	GTG ...	VSF ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
160317	210	ATG ...	MKT ...	Ribo-seq	ATG	weak	11	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, v6-5
1658758	192	GTG ...	VRF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1083708	126	GTG ...	VGT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
512252	42	CTG ...	LLS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Liver
1177989	42	ATG ...	MWE ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
157011	198	CTG ...	LLF ...	Ribo-seq	CTG	weak	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, v6-5
558558	69	TTG ...	LSE ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, v6-5
160779	39	TTG ...	LWE ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, v6-5
823811	114	CTG ...	LGS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
1177340	51	GTG ...	VEP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
552994	141	ATG ...	MQG ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
1084161	63	CTG ...	LWK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, v6-5
1654066	75	CTG ...	LRT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
511898	45	ATG ...	MLL ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, E14, Glioma, Liver, MEF, MESC, NSC
1083149	69	TTG ...	LEV ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, v6-5
1084736	177	GTG ...	VEL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
1083444	162	CTG ...	LFS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
514447	45	TTG ...	LSS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF
1080497	51	GTG ...	VPW ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, v6-5
1082899	69	ATG ...	MHG ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
55659	108	ATG ...	MAF ...	Ribo-seq	ATG	strong	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC
824851	129	GTG ...	VRR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
826404	120	GTG ...	VCA ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
826316	42	TTG ...	LYF ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
1260	57	ATG ...	MAE ...	Ribo-seq	ATG	strong	5	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, Brain, Glioma, Liver, MEF, MESC, v6-5
509637	66	GTG ...	VVS ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
512256	84	ATG ...	MLH ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, v6-5
553668	54	TTG ...	LSE ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, v6-5
558893	78	GTG ...	VPC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
1655847	36	CTG ...	LTL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
511274	39	CTG ...	LSS ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF
549877	63	CTG ...	LGI ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
1230227	36	ATG ...	MGV ...	Ribo-seq	ATG	strong	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
1226287	69	GTG ...	VLS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
516046	93	ATG ...	MPA ...	Ribo-seq	ATG		2	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, v6-5
1081395	30	CTG ...	LMD ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
548866	63	GTG ...	VPC ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, v6-5
824016	165	GTG ...	VEQ ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
145945	30	TTG ...	LWD ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Liver, MEF
1657965	126	CTG ...	LDP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
58870	72	ATG ...	MKS ...	Ribo-seq	ATG	moderate	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC
153054	177	ATG ...	MPL ...	Ribo-seq	ATG	moderate	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, v6-5
148683	30	CTG ...	LSR ...	Ribo-seq	CTG	weak	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, v6-5
154168	87	GTG ...	VKS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain
151407	171	CTG ...	LEA ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, v6-5
822558	51	GTG ...	VSP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
512078	36	ATG ...	MPA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
1659287	213	ATG ...	MKF ...	Ribo-seq	ATG		1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
1557023	51	GTG ...	VWQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1085053	84	TTG ...	LEV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
515704	105	ATG ...	MLH ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, v6-5
553758	99	ATG ...	MEV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1080870	33	CTG ...	LWS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
1658571	78	GTG ...	VDG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
822135	105	ATG ...	MSR ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, Glioma, Liver, MEF, MESC
555617	84	GTG ...	VNV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
549897	69	GTG ...	VTL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
556078	171	CTG ...	LSE ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, v6-5
1889792	60	ATG ...	MWT ...	Ribo-seq	ATG		1	Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC

Export data