Transcript 33323 | MetamORF

Transcript

ID CARD

MetamORF ID

33323

ENSMUST00000090522

Name

Zfp597-201

Strand

Biotype

protein_coding

Start-end positions

3861528-3872396

CDS Start-stop positions

3865631-3872091

CDS Relative positions

Sequences

Transcript sequence

GGT ...

Genome browsers

UCSC

Gene

NCBI:71063

Aliases

4933407K12Rik,
AI462383, AI666357, ENSMUSG00000039789,
MGI:1918313, NCBI:71063, OFF:Zfp597,
Zfp597

Chr 16

ORFs

20 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
369563	42	ATG ...	MMK ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Glioma, Liver, MEF, MESC
792785	99	TTG ...	LGE ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	sORF Upstream	B_cell
33322	51	CTG ...	LSR ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Testis
697205	84	TTG ...	LLH ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
375219	42	TTG ...	LKI ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
793108	78	TTG ...	LRA ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
793822	117	TTG ...	LEK ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
373676	30	ATG ...	MCI ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
691813	81	CTG ...	LHP ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell
794353	48	CTG ...	LFW ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF Upstream	B_cell
794305	63	GTG ...	VAV ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	sORF Upstream	B_cell
794050	63	ATG ...	MCE ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, Glioma, Liver, MEF, MESC
792326	57	CTG ...	LAA ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
793664	72	CTG ...	LVS ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	sORF Upstream	B_cell
375616	72	TTG ...	LFT ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain
793564	69	GTG ...	VSV ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	sORF Upstream	B_cell
372227	30	TTG ...	LKT ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
793347	45	TTG ...	LET ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
370388	60	CTG ...	LSN ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain
368765	39	ATG ...	MKY ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain

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