Transcript 754 | MetamORF

Transcript

ID CARD

MetamORF ID

754

ENSMUST00000084241

Name

Wasf2-201

Strand

Biotype

protein_coding

Start-end positions

133130505-133199756

CDS Start-stop positions

133176483-133195874

CDS Relative positions

Sequences

Transcript sequence

AGG ...

Genome browsers

UCSC

Gene

NCBI:242687

Aliases

AW742646,
D4Ertd13e, ENSMUSG00000028868, MGI:1098641,
NCBI:242687, OFF:Wasf2, Wasf2,
WAVE2

Chr 4

ORFs

65 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
58656	48	ATG ...	MAD ...	Ribo-seq	ATG	strong	5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, E14, Spleen_B_cell
510400	126	ATG ...	MWP ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, MEF, Spleen_B_cell
552320	33	TTG ...	LTG ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, MEF
753	60	TTG ...	LEG ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, R1E, Skin_tumor, Spleen_B_cell
546106	126	CTG ...	LLK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell
544726	75	CTG ...	LPP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
1059563	90	TTG ...	LAG ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	Neutrophil
510527	141	ATG ...	MWW ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, MEF, Spleen_B_cell
509422	186	CTG ...	LTT ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
897325	54	AGG ...	RPV ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	sORF Upstream	BMDC
558577	138	GTG ...	VTL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
897	81	GTG ...	VGE ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Skin_tumor, Spleen_B_cell
558545	201	ATG ...	MWM ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell
558914	210	CTG ...	LLK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell
556700	159	CTG ...	LPP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell
553681	111	ATG ...	MRP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
1232585	72	ACG ...	TRT ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
1233178	84	ATT ...	ICR ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
515444	105	CTG ...	LER ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, E14, Spleen_B_cell
514528	111	GTG ...	VGE ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, MEF, R1E, Spleen_B_cell
1226731	141	GTG ...	VLL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
822822	93	TTG ...	LST ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, E14, MEF
822095	99	GTG ...	VWL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF Upstream	B_cell
513003	57	ATG ...	MQD ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Spleen_B_cell
513506	78	CTG ...	LMA ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E, Spleen_B_cell
554787	93	ATG ...	MEK ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	R1E
823656	129	ATG ...	MMW ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, E14, MEF
552678	141	ATG ...	MAA ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell
547601	132	TTG ...	LAL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell
510567	81	GTG ...	VLM ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
1226051	60	ATT ...	IRV ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
515224	57	ATG ...	MQD ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, Spleen_B_cell
898756	189	ATG ...	MSL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
515190	60	ATG ...	MSL ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, E14, Spleen_B_cell
556515	54	CTG ...	LRA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, E14
553554	75	CTG ...	LKQ ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell
551179	117	ATG ...	MWM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
555879	132	CTG ...	LKT ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, R1E
551489	60	ATG ...	MQR ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell
513062	144	GTG ...	VMW ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, E14, MEF, Spleen_B_cell
514087	90	CTG ...	LQT ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, Spleen_B_cell
827834	78	GTG ...	VGT ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, E14
1230361	228	AGG ...	RIC ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
512258	171	TTG ...	LKS ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, E14, MEF, Spleen_B_cell
556031	225	ATG ...	MAA ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell
826732	132	CTG ...	LSS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
1229295	54	AGG ...	RTF ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1228091	69	ATC ...	IDG ...	Ribo-seq	ATC	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
556807	216	TTG ...	LAL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell
556214	207	TTG ...	LKM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
1228396	153	AAG ...	KRS ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
1226435	228	CTG ...	LIL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
822139	96	CTG ...	LLS ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, MEF
511692	66	CTG ...	LLH ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E, Spleen_B_cell
1377544	39	CTG ...	LRP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
825416	48	GTG ...	VEC ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	sORF Upstream	B_cell, BMDC
513664	63	CTG ...	LHH ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E, Spleen_B_cell
825829	93	CTG ...	LRP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF Upstream	B_cell
863	48	TTG ...	LIF ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, R1E, Skin_tumor, Spleen_B_cell
553132	48	CTG ...	LKT ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, R1E
550424	123	TTG ...	LKM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
1231221	36	AGG ...	RPP ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
513105	75	ATG ...	MAS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
824546	72	ATG ...	MIL ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, E14, MEF
558551	195	ATG ...	MRP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell

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