Transcript 5947 | MetamORF

Transcript

ID CARD

MetamORF ID

5947

ENSMUST00000079758

Name

Aplp2-202

Strand

Biotype

protein_coding

Start-end positions

31149557-31211793

CDS Start-stop positions

31150871-31211727

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

NCBI:11804

Aliases

AI790698,
APLP-2, Aplp2, CDEBP,
ENSMUSG00000031996, MGI:88047, NCBI:11804,
OFF:Aplp2

Chr 9

ORFs

77 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
6863	105	TTG ...	LMC ...	Ribo-seq	TTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, Liver, MEF, NSC, Skin_tumor, v6-5
273674	96	CTG ...	LTQ ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Liver, Neutrophil, NSC
264697	66	TTG ...	LVP ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, v6-5
1114684	30	TTG ...	LTR ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
273564	180	GTG ...	VCF ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, NSC, v6-5
6910	207	ATG ...	MRR ...	Ribo-seq	ATG		9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, Liver, MEF, NSC, Skin_tumor, Testis, v6-5
84423	84	GTG ...	VLR ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Testis
6266	45	ATG ...	MKR ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Liver, MEF, Skin_tumor, v6-5
273131	51	CTG ...	LRE ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, v6-5
884030	66	ATG ...	MPL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, NSC
5946	120	ATG ...	MCA ...	Ribo-seq	ATG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Liver, MEF, NSC, Skin_tumor, Testis, v6-5
6887	234	ATG ...	MTP ...	Ribo-seq	ATG		8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, Liver, MEF, NSC, Skin_tumor, Testis, v6-5
6829	171	CTG ...	LPE ...	Ribo-seq	CTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, NSC, Skin_tumor, Testis, v6-5
264519	36	TTG ...	LTQ ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, NSC
255900	78	CTG ...	LRP ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver
272050	111	CTG ...	LAN ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Liver, Neutrophil, NSC
6992	111	ATG ...	MML ...	Ribo-seq	ATG		8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, Liver, MEF, NSC, Skin_tumor, v6-5
259094	42	CTG ...	LLL ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Liver, MEF
885472	39	TTG ...	LLY ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
259129	39	TTG ...	LLS ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Liver, MEF
6645	132	ATG ...	MAP ...	Ribo-seq	ATG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Liver, MEF, NSC, Skin_tumor, Testis, v6-5
86173	30	TTG ...	LLR ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Testis
6277	93	TTG ...	LTR ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Liver, MEF, NSC, Skin_tumor, Testis, v6-5
6963	105	TTG ...	LVL ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, MEF, NSC, Skin_tumor, v6-5
5982	78	ATG ...	MIM ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, Skin_tumor
6433	108	ATG ...	MLM ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, Skin_tumor, Testis
6831	144	ATG ...	MLK ...	Ribo-seq	ATG		8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, Liver, MEF, Skin_tumor, Testis, v6-5
273404	132	GTG ...	VLF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
273147	108	TTG ...	LLK ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Liver, MEF, NSC, v6-5
6396	63	CTG ...	LRG ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, MEF, NSC, Skin_tumor
265037	72	ATG ...	MST ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
266504	42	TTG ...	LEQ ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, MEF, NSC, v6-5
265244	69	TTG ...	LQP ...	Ribo-seq	TTG	weak	6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, Liver, MEF, NSC
274588	84	TTG ...	LMS ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Liver, MEF, v6-5
272237	78	ATG ...	MIM ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, Liver
273550	189	TTG ...	LFP ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC
260164	81	ATG ...	MSS ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
87887	111	ATG ...	MLL ...	Ribo-seq	ATG		9	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, E14, Glioma, Liver, MEF, MESC, NSC, Testis, v6-5
86814	57	TTG ...	LSC ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, Testis
1572457	225	ATG ...	MVL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
273813	42	TTG ...	LEA ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
84705	30	CTG ...	LLT ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Testis
87270	159	TTG ...	LKK ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Liver, MEF, NSC, Testis, v6-5
270668	33	TTG ...	LRK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
6453	111	ATG ...	MML ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, Skin_tumor, Testis
6792	93	TTG ...	LRP ...	Ribo-seq	TTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, Liver, MEF, Skin_tumor, v6-5
268240	63	GTG ...	VPK ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, v6-5
6973	108	ATG ...	MLM ...	Ribo-seq	ATG		8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, Liver, MEF, NSC, Skin_tumor, v6-5
6817	111	TTG ...	LML ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, MEF, NSC, Skin_tumor, v6-5
6355	96	CTG ...	LLT ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Liver, MEF, NSC, Skin_tumor, Testis, v6-5
273570	54	ATG ...	MLR ...	Ribo-seq	ATG		4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC, v6-5
437553	30	CTG ...	LEW ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
84327	81	CTG ...	LRT ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Testis
6697	93	TTG ...	LRP ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, Skin_tumor
260125	60	ATG ...	MLE ...	Ribo-seq	ATG	weak	7	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, E14, Glioma, Liver, MEF, MESC, NSC
624581	30	GTG ...	VRS ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver
270136	84	CTG ...	LAN ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, Liver, MEF, NSC
6841	102	ATG ...	MCI ...	Ribo-seq	ATG		6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, Liver, NSC, Skin_tumor, v6-5
262349	42	GTG ...	VQE ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC, v6-5
436500	57	TTG ...	LAC ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, NSC, v6-5
6805	108	ATG ...	MLV ...	Ribo-seq	ATG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, MEF, NSC, Skin_tumor, v6-5
259204	57	CTG ...	LEQ ...	Ribo-seq	CTG	strong	5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, Liver, MEF
6914	150	GTG ...	VTL ...	Ribo-seq	GTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, MEF, NSC, Skin_tumor, Testis, v6-5
616778	39	CTG ...	LPV ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, NSC, v6-5
87380	147	CTG ...	LPC ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, Liver, Testis, v6-5
6289	102	ATG ...	MCI ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, Skin_tumor, Testis
83985	42	GTG ...	VRS ...	Ribo-seq	GTG	weak	7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, E14, Liver, MEF, NSC, Testis
6790	153	TTG ...	LFT ...	Ribo-seq	TTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, Liver, MEF, Skin_tumor, Testis, v6-5
6924	246	GTG ...	VTT ...	Ribo-seq	GTG		9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, Liver, MEF, NSC, Skin_tumor, Testis, v6-5
6810	117	GTG ...	VFL ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, MEF, NSC, Skin_tumor, v6-5
267491	69	CTG ...	LTQ ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, Liver, NSC
621091	30	CTG ...	LPC ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14
254906	36	CTG ...	LSL ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Liver, MEF, v6-5
272585	69	TTG ...	LEQ ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Liver, Neutrophil, NSC, v6-5
271247	72	ATG ...	MST ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, Liver, MEF
6693	54	CTG ...	LWE ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Liver, MEF, Skin_tumor, v6-5
6550	105	TTG ...	LMC ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, Skin_tumor, Testis

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