Transcript 39476 | MetamORF

Transcript

ID CARD

MetamORF ID

39476

ENSMUST00000078079

Name

Eif1a-201

Strand

Biotype

protein_coding

Start-end positions

46597704-46610225

CDS Start-stop positions

46607700-46608134

CDS Relative positions

354-788

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

NCBI:13664

Aliases

C76390,
Ef1a, Eftu, eIF-1A,
eIF-4C, Eif1a, Eif4c,
ENSMUSG00000057561, MGI:95298, NCBI:13664,
OFF:Eif1a

Chr 18

ORFs

46 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
394892	60	CTG ...	LQH ...	Ribo-seq	CTG	moderate	14	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
1630019	60	CTG ...	LII ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
801746	183	TTG ...	LER ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, E14, MEF
395666	78	CTG ...	LGM ...	Ribo-seq	CTG	strong	8	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, MEF, NSC, R1E, v6-5
486789	96	GTG ...	VTG ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, E14, MEF, Neutrophil, R1E, v6-5
801970	222	GTG ...	VTG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, E14
393820	51	ATG ...	MIL ...	Ribo-seq	ATG	weak	10	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, B_cell, BMDC, E14, MEF, R1E, v6-5
801330	195	TTG ...	LVT ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, BMDC, E14
394044	33	ATG ...	MKT ...	Ribo-seq	ATG	moderate	11	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, B_cell, BMDC, E14, MEF, R1E, v6-5
803531	147	GTG ...	VAG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
958241	177	AGG ...	RSL ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC
395395	45	TTG ...	LEM ...	Ribo-seq	TTG	strong	7	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, MEF, R1E, v6-5
1196905	30	ATA ...	ILL ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
398661	36	ATG ...	MMK ...	Ribo-seq	ATG	moderate	9	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, B_cell, E14, MEF, R1E, v6-5
399628	228	TTG ...	LPR ...	Ribo-seq	TTG		7	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, MEF, Neutrophil, v6-5
1630519	99	ATG ...	MKR ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF
800950	66	ATG ...	MKM ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF
392868	39	ATG ...	MMM ...	Ribo-seq	ATG	moderate	9	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, B_cell, E14, MEF, R1E, v6-5
396737	69	ATG ...	MMK ...	Ribo-seq	ATG	moderate	9	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, E14, MEF, NSC, R1E, v6-5
1631104	66	TTG ...	LVQ ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Downstream sORF	MEF
398417	33	GTG ...	VSQ ...	Ribo-seq	GTG	moderate	14	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, E14, MEF, Neutrophil, Spleen_B_cell, v6-5
40624	66	CTG ...	LFA ...	Ribo-seq	CTG	moderate	16	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, E14, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
398229	72	ATG ...	MMM ...	Ribo-seq	ATG	moderate	11	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, BMDC, E14, MEF, NSC, R1E, v6-5
486274	60	ATG ...	MNL ...	Ribo-seq	ATG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, MEF, Neutrophil, Spleen_B_cell, v6-5
399995	168	CTG ...	LRF ...	Ribo-seq	CTG		11	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, E14, MEF, Neutrophil, R1E, v6-5
398317	36	ATG ...	MDG ...	Ribo-seq	ATG	strong	13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
802793	87	GTG ...	VPY ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, v6-5
1197298	213	AAG ...	KGS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
800893	189	TTG ...	LFL ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, BMDC, E14, MEF
959292	54	AGG ...	RSP ...	Ribo-seq	AGG	moderate	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, E14
1197605	42	ATA ...	IFT ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
1197276	36	AGG ...	RPE ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF Upstream	E14
484744	39	GTG ...	VDL ...	Ribo-seq	GTG	moderate	13	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
959525	30	AGG ...	RGP ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
398104	48	TTG ...	LLP ...	Ribo-seq	TTG	weak	15	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
1678475	111	ATG ...	MPK ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF
397710	54	TTG ...	LMI ...	Ribo-seq	TTG	moderate	10	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, B_cell, BMDC, E14, MEF, R1E, v6-5
392977	66	ATG ...	MKS ...	Ribo-seq	ATG	moderate	10	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, BMDC, E14, MEF, NSC, R1E, v6-5
1197708	54	TTG ...	LDK ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
394759	45	CTG ...	LPV ...	Ribo-seq	CTG	weak	12	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, E14, MEF, Neutrophil, NSC, R1E, v6-5
1199841	120	AGG ...	RPE ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF Upstream	E14
1197527	96	CTG ...	LRF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF Upstream	E14
398834	69	TTG ...	LVT ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, E14, MEF, Neutrophil, R1E, v6-5
1197665	129	TTG ...	LPF ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
484849	84	TTG ...	LVL ...	Ribo-seq	TTG	moderate	7	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, MEF, Spleen_B_cell, v6-5
39475	54	CTG ...	LRK ...	Ribo-seq	CTG	moderate	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, MEF, Neutrophil, Spleen_B_cell, Testis, v6-5

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