Transcript 39653 | MetamORF

Transcript

ID CARD

MetamORF ID

39653

ENSMUST00000074941

Name

Zfp35-201

Strand

Biotype

protein_coding

Start-end positions

23989632-24005376

CDS Start-stop positions

23990342-24004343

CDS Relative positions

Sequences

Transcript sequence

GCA ...

Genome browsers

UCSC

Gene

NCBI:22694

Aliases

ENSMUSG00000063281,
MGI:99179, mszf13, mszf20-1,
mszf28, mszf68, NCBI:22694,
OFF:Zfp35, Zfp-35, Zfp35,
Znf271

Chr 18

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1155566	48	GTG ...	VRL ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E, v6-5
40061	54	CTG ...	LLA ...	Ribo-seq	CTG	weak	9	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Brain, E14, Liver, Neutrophil, R1E, Testis, v6-5
39652	33	GTG ...	VDK ...	Ribo-seq	GTG	moderate	9	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, E14, Liver, MEF, Neutrophil, R1E, Testis, v6-5
1154956	54	ATG ...	MWT ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	sORF Upstream	E14, Glioma, Liver, MEF, MESC, v6-5
1631042	105	ATG ...	MNV ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
959191	42	ATT ...	IQL ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
1630188	108	GTG ...	VMN ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
40915	138	ATG ...	MES ...	Ribo-seq	ATG		17	sORFs_org_Mouse Johnstone2016	sORF Upstream	3T3, B_cell, BMDC, Brain, C2C12, E14, Glioma, Liver, MEF, MESC, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
40441	78	CTG ...	LSS ...	Ribo-seq	CTG	weak	10	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, R1E, Testis, v6-5
39934	51	CTG ...	LAS ...	Ribo-seq	CTG	moderate	11	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, R1E, Testis, v6-5
1629788	54	ATG ...	MFP ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
1630003	81	CTG ...	LKS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
396976	36	ATG ...	MTS ...	Ribo-seq	ATG	moderate	14	sORFs_org_Mouse Johnstone2016	sORF Upstream	3T3, BMDC, Brain, C2C12, E14, Glioma, Liver, MEF, MESC, Neutrophil, R1E, Spleen_B_cell, v6-5
40855	144	TTG ...	LGM ...	Ribo-seq	TTG		12	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
1631017	45	ATG ...	MTP ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1199414	129	AGA ...	RNS ...	Ribo-seq	AGA		1	sORFs_org_Mouse	sORF Upstream	E14
396666	30	TTG ...	LES ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, v6-5
1631764	30	GTG ...	VRN ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1197514	294	ATG ...	MVI ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
1631342	30	TTG ...	LLQ ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
395249	51	ATG ...	MVR ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E, v6-5
1630131	63	TTG ...	LRR ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
40685	96	CTG ...	LYN ...	Ribo-seq	CTG	weak	9	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Brain, E14, Liver, Neutrophil, R1E, Testis, v6-5

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