Transcript 530 | MetamORF

Transcript

ID CARD

MetamORF ID

530

ENSMUST00000074519

Name

Txnip-202

Strand

Biotype

protein_coding

Start-end positions

96557957-96561883

CDS Start-stop positions

96558236-96560529

CDS Relative positions

Sequences

Transcript sequence

GAC ...

Genome browsers

UCSC

Gene

NCBI:56338

Aliases

1200008J08Rik,
AA682105, ENSMUSG00000038393, Hyplip1,
MGI:1889549, NCBI:56338, OFF:Txnip,
Tbp-2, THIF, Txnip,
VDUP1

Chr 3

ORFs

49 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
54371	84	GTG ...	VAR ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, v6-5
55529	258	GTG ...	VMT ...	Ribo-seq	GTG		9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, R1E, v6-5
505157	51	TTG ...	LGF ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	sORF Upstream	3T3, MEF, Neutrophil, v6-5
1373579	177	GTG ...	VAW ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
503851	96	CTG ...	LGE ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, Liver, MEF, R1E, v6-5
506567	90	TTG ...	LFE ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative sORF Upstream	3T3, MEF, Neutrophil, v6-5
54287	129	GTG ...	VKL ...	Ribo-seq	GTG	weak	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, Neutrophil, R1E, v6-5
54646	240	CTG ...	LTL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, MEF, Neutrophil, v6-5
52847	165	ATG ...	MAR ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, MEF, Neutrophil, v6-5
1648723	48	TTG ...	LEM ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
865378	72	GTG ...	VCQ ...	Ribo-seq	GTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, MEF
55240	237	CTG ...	LTL ...	Ribo-seq	CTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, Liver, MEF, Neutrophil, R1E, v6-5
1647063	42	ATG ...	MKN ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
1373974	186	TTG ...	LRI ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
504690	63	CTG ...	LKA ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	Alternative sORF Upstream	3T3, MEF, Neutrophil, R1E, v6-5
529	81	GTG ...	VAR ...	Ribo-seq	GTG		9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, R1E, Skin_tumor, v6-5
55123	255	ATG ...	MTS ...	Ribo-seq	ATG		9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, R1E, v6-5
508693	75	ATG ...	MST ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, Neutrophil, R1E, v6-5
508024	87	CTG ...	LET ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, Neutrophil, R1E, v6-5
1646021	51	ATG ...	MLE ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
502988	75	TTG ...	LKL ...	Ribo-seq	TTG	weak	6	sORFs_org_Mouse	sORF Upstream	3T3, MEF, Neutrophil, v6-5
505701	81	CTG ...	LMD ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, MEF
505131	120	CTG ...	LPK ...	Ribo-seq	CTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, E14, Liver, MEF, R1E, v6-5
503567	36	CTG ...	LKL ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Liver, MEF, Neutrophil
505128	36	CTG ...	LTL ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	sORF Upstream	3T3, Liver, MEF, Neutrophil, v6-5
505678	78	ATG ...	MDV ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, MEF
17160	33	GTG ...	VQT ...	Ribo-seq	GTG	moderate	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver, MEF, Neutrophil, R1E, Skin_tumor, v6-5
53833	261	GTG ...	VMT ...	Ribo-seq	GTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Liver, MEF, Neutrophil, v6-5
53227	84	ATG ...	MWT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
508136	66	CTG ...	LDR ...	Ribo-seq	CTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, R1E, v6-5
751422	39	CTG ...	LDR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, v6-5
53577	171	TTG ...	LPM ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, MEF, Neutrophil, v6-5
505736	90	TTG ...	LRK ...	Ribo-seq	TTG	weak	7	sORFs_org_Mouse	Alternative sORF Upstream	3T3, MEF, Neutrophil, R1E, v6-5
54875	162	ATG ...	MAR ...	Ribo-seq	ATG		9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, Liver, MEF, Neutrophil, R1E, v6-5
52380	66	TTG ...	LRW ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, v6-5
53405	36	CTG ...	LAP ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, v6-5
505532	120	CTG ...	LVS ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, MEF, Neutrophil, v6-5
53258	258	ATG ...	MTS ...	Ribo-seq	ATG		5	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Liver, MEF, Neutrophil, v6-5
54177	108	TTG ...	LRR ...	Ribo-seq	TTG	weak	7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Liver, MEF, R1E, v6-5
55413	168	TTG ...	LPM ...	Ribo-seq	TTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, Liver, MEF, Neutrophil, R1E, v6-5
55306	231	TTG ...	LRT ...	Ribo-seq	TTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, Liver, MEF, Neutrophil, R1E, v6-5
55388	189	TTG ...	LWP ...	Ribo-seq	TTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, v6-5
51961	42	GTG ...	VSL ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
54449	243	ATG ...	MLT ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, MEF, Neutrophil, v6-5
503961	75	TTG ...	LRR ...	Ribo-seq	TTG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, MEF, Neutrophil, R1E, v6-5
53505	192	TTG ...	LWP ...	Ribo-seq	TTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Liver, MEF, Neutrophil, v6-5
54927	240	ATG ...	MLT ...	Ribo-seq	ATG		8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, Liver, MEF, Neutrophil, R1E, v6-5
52157	234	TTG ...	LRT ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, MEF, Neutrophil, v6-5
17023	54	GTG ...	VDA ...	Ribo-seq	GTG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, MEF, Neutrophil, Skin_tumor, v6-5

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