Transcript 46896 | MetamORF

Transcript

ID CARD

MetamORF ID

46896

ENSMUST00000069817

Name

Prrc2b-202

Strand

Biotype

protein_coding

Start-end positions

32151148-32234522

CDS Start-stop positions

32182512-32230742

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

NCBI:227723

Aliases

5830434P21Rik,
AI173903, Bat2l, Bat2l1,
D430039P21, ENSMUSG00000039262, MGI:1923304,
mKIAA0515, NCBI:227723, OFF:Prrc2b,
Prrc2b

Chr 2

ORFs

10 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
102940	129	CTG ...	LEG ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
96600	48	TTG ...	LPQ ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, R1E
733160	54	CTG ...	LHR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
46895	45	ATG ...	MGT ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Testis
99025	69	GTG ...	VEP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
115557	60	ATG ...	MGK ...	Ribo-seq	ATG	strong	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, MEF, R1E, v6-5
126043	90	CTG ...	LSP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
111749	90	ATG ...	MTF ...	Ribo-seq	ATG	weak	11	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, v6-5
106348	72	ATG ...	MAY ...	Ribo-seq	ATG	strong	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, R1E, v6-5
111512	42	CTG ...	LEG ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain

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