Metam
ORF

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Transcript

ID CARD

MetamORF ID

145957

ID

ENSMUST00000069533

Name

Cap1-201

Strand

-

Biotype

protein_coding

Start-end positions

122859047-122885911

CDS Start-stop positions

122860134-122872443

CDS Relative positions

-

Sequences

Transcript sequence

GAG ...

Gene

ID

NCBI:12331

Aliases

Cap1,
ENSMUSG00000028656, MGI:88262, NCBI:12331,
OFF:Cap1


Chr 4

ORFs

52 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

60266 78

CTG ...

LVL ...

Ribo-seq
CTG 11 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, R1E
60664 99

ATG ...

MSS ...

Ribo-seq
ATG 9 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
E14, Glioma, Liver,
MEF, MESC, Neutrophil,
NSC, R1E
60533 90

ATG ...

MTR ...

Ribo-seq
ATG 9 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
Glioma, Liver, MEF,
MESC, Neutrophil, R1E
60049 162

GTG ...

VDC ...

Ribo-seq
GTG 7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
MEF, Neutrophil, R1E
554728 39

TTG ...

LTR ...

Ribo-seq
TTG weak 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, R1E
1539 42

ATG ...

MWI ...

Ribo-seq
ATG 8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
Liver, MEF, Neutrophil,
R1E
166279 156

GTG ...

VVQ ...

Ribo-seq
GTG 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
E14, MEF, Neutrophil,
R1E
1510635 120

ATG ...

MSC ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC
60407 96

TTG ...

LFF ...

Ribo-seq
TTG 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
MEF, NSC
713 69

ATG ...

MDG ...

Ribo-seq
ATG 9 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
Liver, MEF, Neutrophil,
NSC, R1E
549879 30

TTG ...

LMT ...

Ribo-seq
TTG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Neutrophil
1224798 57

ATC ...

IIY ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
899979 48

AGG ...

RNQ ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
60583 90

GTG ...

VDM ...

Ribo-seq
GTG 8 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
MEF, Neutrophil, NSC,
R1E
900308 75

AGG ...

RNQ ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
166141 141

CTG ...

LWD ...

Ribo-seq
CTG 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
MEF, R1E
60037 45

CTG ...

LAW ...

Ribo-seq
CTG 8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
Liver, MEF, NSC,
R1E
512750 66

CTG ...

LGG ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, Neutrophil
1225114 66

ACG ...

TSS ...

Ribo-seq
ACG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
59608 63

CTG ...

LHH ...

Ribo-seq
CTG 9 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
E14, MEF, Neutrophil,
NSC, R1E
1229859 51

AAG ...

KCQ ...

Ribo-seq
AAG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
61119 42

TTG ...

LHR ...

Ribo-seq
TTG 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
MEF, Neutrophil
161385 60

GTG ...

VKA ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, R1E
510041 96

CTG ...

LHL ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, E14,
R1E
900669 51

ATA ...

ILL ...

Ribo-seq
ATA 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
145956 48

CTG ...

LLS ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, R1E
151399 39

GTG ...

VKA ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
162749 150

CTG ...

LDP ...

Ribo-seq
CTG 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
MEF, R1E
60351 108

ATG ...

MDS ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, MEF, NSC
827 39

CTG ...

LPC ...

Ribo-seq
CTG weak 9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
E14, MEF, Neutrophil,
NSC, R1E
59894 72

CTG ...

LTT ...

Ribo-seq
CTG 10 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
Liver, MEF, Neutrophil,
NSC, R1E
163530 69

CTG ...

LLS ...

Ribo-seq
CTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
MEF, R1E
148230 45

CTG ...

LIC ...

Ribo-seq
CTG weak 7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, MEF,
Neutrophil
61165 63

GTG ...

VSS ...

Ribo-seq
GTG 8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
Liver, MEF, Neutrophil,
R1E
900979 69

ACG ...

TTL ...

Ribo-seq
ACG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1276 42

TTG ...

LAW ...

Ribo-seq
TTG strong 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, MEF,
Neutrophil
1230539 30

ATC ...

ITL ...

Ribo-seq
ATC weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
900616 72

AGG ...

RLT ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
164480 123

CTG ...

LHL ...

Ribo-seq
CTG 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
E14, Neutrophil, R1E
60051 84

ATG ...

MET ...

Ribo-seq
ATG 7 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
Glioma, Liver, MEF,
MESC, NSC, R1E
160415 45

CTG ...

LSV ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, R1E
155812 129

GTG ...

VVQ ...

Ribo-seq
GTG 6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, E14,
MEF, Neutrophil, R1E
513823 114

GTG ...

VAP ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, MEF,
R1E
56495 36

ATG ...

MSS ...

Ribo-seq
ATG 8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
E14, Liver, MEF,
NSC, R1E
975 93

CTG ...

LGQ ...

Ribo-seq
CTG 10 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
E14, Liver, MEF,
Neutrophil, NSC, R1E
1230668 36

ATA ...

IRS ...

Ribo-seq
ATA weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
900205 78

ATC ...

IIY ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1230941 72

AGG ...

RWL ...

Ribo-seq
AGG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
164977 66

CTG ...

LSV ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
R1E
511671 51

ATG ...

MCK ...

Ribo-seq
ATG weak 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, NSC, R1E
56772 33

CTG ...

LWI ...

Ribo-seq
CTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, MEF,
R1E
162713 141

GTG ...

VAP ...

Ribo-seq
GTG 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
MEF, Neutrophil, R1E

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5