Transcript 2452 | MetamORF

Transcript

ID CARD

MetamORF ID

2452

ENSMUST00000068581

Name

Gja1-201

Strand

Biotype

protein_coding

Start-end positions

56377330-56390415

CDS Start-stop positions

56387547-56388695

CDS Relative positions

203-1351

Sequences

Transcript sequence

ACG ...

Genome browsers

UCSC

Gene

NCBI:14609

Aliases

AU042049,
AW546267, Cnx43, connexin43,
Cx43, Cx43alpha1, Cxnk1,
ENSMUSG00000050953, Gja-1, Gja1,
MGI:95713, NCBI:14609, Npm1,
OFF:Gja1

Chr 10

ORFs

62 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
7600	66	CTG ...	LLL ...	Ribo-seq	CTG	weak	13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, Skin_tumor, Testis, v6-5
1255959	54	ACG ...	TTA ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1281775	108	ATC ...	IQR ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
6636	159	ATG ...	MNS ...	Ribo-seq	ATG	moderate	16	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Glioma, Liver, MEF, MESC, NSC, R1E, Skin_tumor, Testis, v6-5
61852	66	TTG ...	LIS ...	Ribo-seq	TTG	weak	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, Testis, v6-5
1231073	186	ATT ...	IPP ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
67478	117	GTG ...	VKM ...	Ribo-seq	GTG	moderate	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, NSC, R1E, Testis, v6-5
63369	276	ATG ...	MLT ...	Ribo-seq	ATG	moderate	10	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Glioma, Liver, MEF, MESC, NSC, R1E, Testis, v6-5
190773	30	CTG ...	LMT ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, NSC
274919	42	CTG ...	LCP ...	Ribo-seq	CTG	weak	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, v6-5
287743	51	GTG ...	VPA ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Brain, E14, MEF, NSC, v6-5
73217	201	CTG ...	LVT ...	Ribo-seq	CTG	moderate	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, Testis, v6-5
7627	57	CTG ...	LTT ...	Ribo-seq	CTG	weak	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, Skin_tumor, Testis, v6-5
1263783	87	ACG ...	TLL ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
7568	150	CTG ...	LPF ...	Ribo-seq	CTG	moderate	15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, Skin_tumor, Testis, v6-5
1230494	78	ACG ...	TSH ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1234586	54	AAG ...	KRS ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1262093	93	ATC ...	ISK ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1280408	255	AAG ...	KPT ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
65241	264	ATG ...	MAA ...	Ribo-seq	ATG	moderate	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, Testis, v6-5
1254467	30	ATC ...	ILT ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
6481	294	GTG ...	VTG ...	Ribo-seq	GTG	weak	15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, Skin_tumor, Testis, v6-5
1232747	135	ATT ...	ITA ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1232954	237	AGG ...	RWP ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
2505	48	TTG ...	LKS ...	Ribo-seq	TTG	moderate	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, Skin_tumor, Testis, v6-5
1689315	36	ATG ...	MRR ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative Downstream sORF	Glioma, Liver, MEF, MESC
1240592	84	ATA ...	ICL ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
5987	177	TTG ...	LSQ ...	Ribo-seq	TTG	weak	15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, Skin_tumor, Testis, v6-5
6609	42	ATG ...	MPK ...	Ribo-seq	ATG	moderate	12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, Skin_tumor, Testis, v6-5
86410	111	ATG ...	MSA ...	Ribo-seq	ATG	moderate	12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, NSC, R1E, Testis, v6-5
2888	126	GTG ...	VRS ...	Ribo-seq	GTG	weak	13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, Skin_tumor, Testis, v6-5
70834	102	ATG ...	MTS ...	Ribo-seq	ATG	moderate	13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, NSC, R1E, Testis, v6-5
2481	162	CTG ...	LGP ...	Ribo-seq	CTG	moderate	13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, Skin_tumor, Testis, v6-5
246208	117	CTG ...	LER ...	Ribo-seq	CTG	moderate	12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, v6-5
3874	162	GTG ...	VVH ...	Ribo-seq	GTG	moderate	12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, Skin_tumor, v6-5
1254848	147	AAG ...	KRS ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1257456	63	AGG ...	REG ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
7499	33	ATG ...	MSS ...	Ribo-seq	ATG	weak	13	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Glioma, Liver, MEF, MESC, NSC, R1E, Skin_tumor, Testis, v6-5
1247941	171	ATT ...	ITT ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1250457	81	ATC ...	ISD ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
289230	87	TTG ...	LTS ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Brain, MEF, NSC, v6-5
160726	30	CTG ...	LRA ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Alternative sORF Upstream	Brain, E14, MEF, v6-5
211235	54	GTG ...	VAV ...	Ribo-seq	GTG	strong	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, R1E, v6-5
6706	123	CTG ...	LQE ...	Ribo-seq	CTG	weak	12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, Skin_tumor, v6-5
7570	162	GTG ...	VMN ...	Ribo-seq	GTG	moderate	14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, Skin_tumor, Testis, v6-5
5532	30	TTG ...	LLL ...	Ribo-seq	TTG	moderate	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, NSC, R1E, Skin_tumor
1267457	51	ATA ...	ISL ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
201102	90	CTG ...	LLP ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, v6-5
65083	81	CTG ...	LGE ...	Ribo-seq	CTG	strong	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, Testis, v6-5
1269790	117	ATC ...	IEW ...	Ribo-seq	ATC	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1232902	126	GTG ...	VPA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
81953	198	GTG ...	VTE ...	Ribo-seq	GTG	weak	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, Testis, v6-5
2451	99	CTG ...	LRI ...	Ribo-seq	CTG	moderate	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, Skin_tumor, v6-5
1240782	36	AAG ...	KHH ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1254763	105	AGG ...	RPE ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1242654	159	AAG ...	KPA ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
5886	219	CTG ...	LGT ...	Ribo-seq	CTG	moderate	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, Skin_tumor, Testis, v6-5
62387	45	TTG ...	LSS ...	Ribo-seq	TTG	weak	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, Testis, v6-5
1257486	162	TTG ...	LTS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
5141	108	CTG ...	LPP ...	Ribo-seq	CTG	weak	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, Skin_tumor, v6-5
57620	117	CTG ...	LPQ ...	Ribo-seq	CTG	weak	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, Testis, v6-5
1176039	33	GTG ...	VRE ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	MEF, v6-5

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