Transcript 1730 | MetamORF

Transcript

ID CARD

MetamORF ID

1730

ENSMUST00000068110

Name

Pcdh7-201

Strand

Biotype

protein_coding

Start-end positions

57718020-57729465

CDS Start-stop positions

57719105-57728149

CDS Relative positions

Sequences

Transcript sequence

AGA ...

Genome browsers

UCSC

Gene

NCBI:54216

Aliases

ENSMUSG00000029108,
MGI:1860487, NCBI:54216, OFF:Pcdh7,
Pcdh7

Chr 5

ORFs

31 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
169196	111	TTG ...	LAR ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
177735	126	TTG ...	LLR ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF Upstream	Brain
184279	108	TTG ...	LGT ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Alternative sORF Upstream	Brain
177742	147	GTG ...	VRE ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	Brain
175493	102	TTG ...	LET ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	sORF Upstream	Brain
181696	57	ATG ...	MAR ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	sORF Upstream	Brain
1729	30	ATG ...	MLT ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Skin_tumor
560474	114	CTG ...	LET ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
1018215	66	ATG ...	MTL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF Upstream	Brain
172045	63	ATG ...	MFP ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
174090	246	TTG ...	LWL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain
566097	60	CTG ...	LRT ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
170632	186	CTG ...	LQI ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
177456	213	ATG ...	MTL ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
565034	69	CTG ...	LTW ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
172583	207	TTG ...	LRR ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
184990	45	ATG ...	MDR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
167018	30	ATG ...	MYL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
561739	33	CTG ...	LDL ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	NSC
182593	90	GTG ...	VRS ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	sORF Upstream	Brain
902981	144	AGG ...	REG ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
168443	153	ATG ...	MQV ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, Brain
562944	30	GTG ...	VTN ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	v6-5
170591	63	CTG ...	LKM ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	sORF Upstream	Brain
171255	33	CTG ...	LPW ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
184287	60	ATG ...	MVA ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	Brain
176455	144	CTG ...	LGV ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
1018117	60	TTG ...	LWG ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF Upstream	Brain
184108	174	CTG ...	LLQ ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	Brain
561585	75	ATG ...	MRL ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
175835	54	ATG ...	MKR ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain

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