Transcript 17451 | MetamORF

Transcript

ID CARD

MetamORF ID

17451

ENSMUST00000067936

Name

Arhgdia-201

Strand

Biotype

protein_coding

Start-end positions

120578109-120581380

CDS Start-stop positions

120579231-120580371

CDS Relative positions

Sequences

Transcript sequence

AGG ...

Genome browsers

UCSC

Gene

NCBI:192662

Aliases

5330430M07Rik,
Arhgdia, ENSMUSG00000025132, Gdi-1,
MGI:2178103, NCBI:192662, OFF:Arhgdia,
rho GDI 1, Rho GDI alpha, Rho-GDI,
rho-GDI alpha, RhoDGI, RhoGDI-1

Chr 11

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
774256	231	TTG ...	LLG ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell
312472	123	ATG ...	MCF ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain
317144	93	TTG ...	LGI ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Brain, MEF
293381	57	TTG ...	LPV ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain
23456	45	ATG ...	MQH ...	Ribo-seq	ATG		6	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, MEF, Testis
649547	132	GTG ...	VFP ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	sORF Upstream	3T3
8694	33	ATG ...	MGR ...	Ribo-seq	ATG	strong	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, MEF
650455	183	TTG ...	LRA ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
303306	99	GTG ...	VES ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, Brain, MEF
8875	54	CTG ...	LTT ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, MEF, Testis
298427	30	CTG ...	LPQ ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, MEF
302770	39	GTG ...	VGF ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain
304901	48	GTG ...	VSQ ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Brain, Liver, MEF
20675	45	ATG ...	MQH ...	Ribo-seq	ATG		6	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, MEF, Testis
22669	276	GTG ...	VSP ...	Ribo-seq	GTG		4	sORFs_org_Mouse	CDS sORF	Brain, MEF, Neutrophil, Testis
312317	75	CTG ...	LRI ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF Upstream	Brain
309870	105	CTG ...	LGV ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, Brain, MEF
315292	39	CTG ...	LSL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain
19630	33	CTG ...	LQR ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, Liver, MEF, Testis
651924	66	TTG ...	LAD ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
308635	51	CTG ...	LML ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF Upstream	Brain
658317	33	CTG ...	LQT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
17450	45	ATG ...	MKA ...	Ribo-seq	ATG	moderate	8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, MEF, Testis
8601	63	TTG ...	LTR ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, MEF, Testis

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