Transcript 33369 | MetamORF

Transcript

ID CARD

MetamORF ID

33369

ENSMUST00000067744

Name

Cggbp1-201

Strand

Biotype

protein_coding

Start-end positions

64851996-64859507

CDS Start-stop positions

64855573-64856076

CDS Relative positions

491-994

Sequences

Transcript sequence

GAC ...

Genome browsers

UCSC

Gene

NCBI:106143

Aliases

AA960172,
AL023996, AW045841, Cggbp1,
ENSMUSG00000054604, MGI:2146370, NCBI:106143,
OFF:Cggbp1

Chr 16

ORFs

46 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
700075	108	TTG ...	LLC ...	Ribo-seq	TTG		6	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, E14, Liver, MEF, v6-5
1621909	126	CTG ...	LNE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
792311	81	GTG ...	VVL ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, E14, MEF
793388	33	CTG ...	LEI ...	Ribo-seq	CTG		4	sORFs_org_Mouse	sORF Upstream	B_cell, E14, MEF, Neutrophil
475332	96	GTG ...	VPG ...	Ribo-seq	GTG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, R1E, Spleen_B_cell, v6-5
1187614	51	AGG ...	RVQ ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
976122	177	CTG ...	LAR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF Upstream	E14, MEF
792644	75	TTG ...	LHP ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, E14, MEF
1147268	57	GTG ...	VSF ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, NSC, R1E, v6-5
35259	75	CTG ...	LAR ...	Ribo-seq	CTG		13	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
378068	147	CTG ...	LSR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative sORF Upstream	Brain, E14, MEF
1186528	225	ATC ...	ISF ...	Ribo-seq	ATC		1	sORFs_org_Mouse	sORF Upstream	E14
375609	84	ATG ...	MFA ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, Glioma, Liver, MEF, MESC, R1E
1189066	123	ATC ...	ISF ...	Ribo-seq	ATC		1	sORFs_org_Mouse	sORF Upstream	E14
371109	150	CTG ...	LSR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative sORF Upstream	E14, MEF
34196	33	CTG ...	LFP ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, BMDC, E14, MEF, Neutrophil, R1E, Testis, v6-5
375163	69	CTG ...	LNL ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, NSC, v6-5
369284	63	TTG ...	LEV ...	Ribo-seq	TTG	strong	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, MEF, NSC, v6-5
475882	135	GTG ...	VAA ...	Ribo-seq	GTG	strong	6	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, E14, MEF, Spleen_B_cell
370948	69	CTG ...	LSL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative sORF Upstream	E14, MEF
694601	66	CTG ...	LHR ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, E14, Neutrophil, R1E, v6-5
34837	78	ATG ...	MTS ...	Ribo-seq	ATG	moderate	13	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	B_cell, BMDC, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
1148231	48	ATG ...	MRM ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, NSC, v6-5
376823	66	CTG ...	LSL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative sORF Upstream	Brain, E14, MEF
953722	69	AGG ...	RAR ...	Ribo-seq	AGG		2	sORFs_org_Mouse	sORF Upstream	BMDC, E14
1188016	141	ACG ...	TAV ...	Ribo-seq	ACG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
1147284	42	ATG ...	MEA ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, v6-5
1540462	84	ATG ...	MAT ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative Downstream Overlapping sORF	Brain, Glioma, Liver, MEF, MESC
792275	42	ATG ...	MRL ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse Johnstone2016	sORF Upstream	B_cell, E14, Glioma, Liver, MEF, MESC, R1E
792319	72	CTG ...	LPL ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, R1E
1186344	210	TTG ...	LLC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF Upstream	E14
1187554	39	ATT ...	ICC ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
794213	93	TTG ...	LDA ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, E14, MEF
1188853	48	ACG ...	TAA ...	Ribo-seq	ACG		1	sORFs_org_Mouse	sORF Upstream	E14
793481	36	CTG ...	LLE ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, R1E, v6-5
691889	42	CTG ...	LRK ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, Neutrophil, R1E, v6-5
33368	48	GTG ...	VQA ...	Ribo-seq	GTG	moderate	10	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, BMDC, Brain, E14, MEF, Neutrophil, R1E, Testis, v6-5
1188589	171	AGG ...	RAR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF Upstream	E14
1624674	123	CTG ...	LNE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
371691	51	CTG ...	LHL ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, NSC, v6-5
952922	81	ACG ...	TGS ...	Ribo-seq	ACG	strong	2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, E14
793926	42	TTG ...	LQC ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, NSC, v6-5
951735	87	CTG ...	LMA ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC, Brain
793337	63	GTG ...	VTT ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, R1E
794397	36	CTG ...	LWF ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	sORF Upstream	B_cell, R1E
368794	153	GTG ...	VQQ ...	Ribo-seq	GTG	weak	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, R1E, Spleen_B_cell, v6-5

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