Transcript 59190 | MetamORF

Transcript

ID CARD

MetamORF ID

59190

ENSMUST00000067567

Name

Lypla2-201

Strand

Biotype

protein_coding

Start-end positions

135968224-135972626

CDS Start-stop positions

135969017-135970937

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:26394

Aliases

ENSMUSG00000028670,
Lypla2, LysoII, MGI:1347000,
NCBI:26394, OFF:Lypla2

Chr 4

ORFs

27 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
510244	60	GTG ...	VPV ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	Neutrophil
1465350	45	ATG ...	MSS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
148980	39	CTG ...	LPT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
153525	63	CTG ...	LCP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
551575	30	CTG ...	LEL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
59189	57	GTG ...	VPR ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, NSC, Testis
557009	72	CTG ...	LTP ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, E14, Liver, R1E
149657	75	GTG ...	VPR ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14, NSC, R1E
414288	66	ACG ...	TVS ...	Ribo-seq	ACG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	C2C12, E14
153580	81	ATG ...	MAV ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14, NSC, R1E
514644	81	TTG ...	LSH ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, Liver, NSC, R1E
161767	99	CTG ...	LRS ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, NSC, R1E
158379	66	GTG ...	VGP ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain
161711	57	ATG ...	MPQ ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, NSC, R1E, v6-5
514814	72	CTG ...	LPG ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, Liver, NSC, R1E
1015715	75	CTG ...	LTP ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, R1E
900706	75	ATC ...	IAR ...	Ribo-seq	ATC		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, E14
515964	42	GTG ...	VSC ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, NSC
512517	54	GTG ...	VRE ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	Neutrophil
164741	102	CTG ...	LPT ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, NSC
555094	42	ATG ...	MSS ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, Liver, MEF, R1E, v6-5
161589	84	CTG ...	LLS ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, NSC, R1E
515538	96	CTG ...	LCG ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, MEF, Neutrophil, NSC, Spleen_B_cell
514664	45	ATG ...	MKL ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, NSC
1462	66	CTG ...	LTV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	NSC
556831	39	CTG ...	LAS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, NSC, v6-5
155892	78	GTG ...	VVT ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain

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