Transcript 343841

Transcript

ID CARD

MetamORF ID

343841

ENSMUST00000065504

Name

Anxa7-201

Strand

Biotype

protein_coding

Start-end positions

20455260-20480133

CDS Start-stop positions

20456479-20473328

CDS Relative positions

Sequences

Transcript sequence

TTG ...

Genome browsers

UCSC

Gene

NCBI:11750

Aliases

AI265384,
AI316497, Anx7, Anxa7,
ENSMUSG00000021814, MGI:88031, NCBI:11750,
OFF:Anxa7, synexin

Chr 14

ORFs

70 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
467777	33	TTG ...	LNV ...	Ribo-seq	TTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Liver, R1E, Spleen_B_cell, v6-5
678883	33	ATG ...	MPG ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, v6-5
1308995	132	TTG ...	LCL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
679020	51	ATG ...	MRH ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	3T3, Glioma, Liver, MEF, MESC
945332	135	ATG ...	MLC ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
11196	57	TTG ...	LNV ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, R1E, Spleen_B_cell, v6-5
946332	30	CTG ...	LAP ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, E14
945355	45	ACG ...	TTP ...	Ribo-seq	ACG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
465997	42	CTG ...	LEV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
347905	60	CTG ...	LEA ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, R1E, Spleen_B_cell
467267	147	CTG ...	LRV ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Spleen_B_cell
1309907	99	AGG ...	RSW ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
468722	141	CTG ...	LAI ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, R1E, Spleen_B_cell
10768	54	CTG ...	LAR ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, Liver, MEF, Spleen_B_cell
946882	60	ACG ...	TTP ...	Ribo-seq	ACG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
676808	48	TTG ...	LQE ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF Upstream	3T3, E14
945717	60	ACG ...	TCI ...	Ribo-seq	ACG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
680791	105	TTG ...	LGQ ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, Liver, R1E
469092	111	ATG ...	MVA ...	Ribo-seq	ATG		5	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC, R1E, Spleen_B_cell
469033	84	TTG ...	LWM ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Liver
353706	42	CTG ...	LED ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Liver, R1E
469190	57	ATG ...	MPG ...	Ribo-seq	ATG		7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, E14, MEF, Spleen_B_cell, v6-5
469143	75	TTG ...	LCL ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, Liver
11256	60	ATG ...	MMP ...	Ribo-seq	ATG		6	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, BMDC, Glioma, Liver, MEF, MESC, Spleen_B_cell, v6-5
946672	75	GTG ...	VTR ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
1178695	60	ATT ...	ILN ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
353755	78	GTG ...	VAF ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Liver, R1E
945829	42	ATC ...	IPP ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
11173	69	CTG ...	LAR ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, Liver, MEF, R1E, Spleen_B_cell
467856	174	CTG ...	LQV ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Liver, Spleen_B_cell
674835	63	TTG ...	LRC ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, R1E
946358	72	AGG ...	RNS ...	Ribo-seq	AGG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
1307848	48	AGG ...	RTD ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1307109	36	ATT ...	ILN ...	Ribo-seq	ATT		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1309632	33	AAG ...	KNK ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
353156	87	TTG ...	LRC ...	Ribo-seq	TTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, Liver, MEF, R1E, Spleen_B_cell
11188	105	TTG ...	LDE ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Liver, MEF, R1E, Spleen_B_cell, v6-5
1310001	66	ACG ...	TLS ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
10803	81	TTG ...	LDE ...	Ribo-seq	TTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, Liver, MEF, R1E, Spleen_B_cell, v6-5
349184	39	GTG ...	VHK ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, R1E, Spleen_B_cell
344423	75	GTG ...	VGI ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, R1E, Spleen_B_cell
1307759	60	ATT ...	IEW ...	Ribo-seq	ATT	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1308665	48	AGG ...	RAP ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
680078	57	ATG ...	MTR ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver
945202	36	AAG ...	KKF ...	Ribo-seq	AAG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
11224	93	TTG ...	LRR ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, R1E, Spleen_B_cell, v6-5
468479	108	GTG ...	VAD ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver, R1E, Spleen_B_cell
1307923	93	ATC ...	ILF ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
353448	69	CTG ...	LED ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Liver, R1E
468570	156	GTG ...	VEQ ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, Liver, R1E, Spleen_B_cell
1179065	90	AAG ...	KQL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
946978	213	ATC ...	IPP ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
1307523	48	AGG ...	RPG ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1309283	36	AAG ...	KQC ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
468810	78	ATG ...	MLC ...	Ribo-seq	ATG		5	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, Glioma, Liver, MEF, MESC
343840	99	GTG ...	VLT ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, R1E, Spleen_B_cell
849988	102	TTG ...	LLF ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Liver
348441	123	GTG ...	VAF ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, Liver, R1E, Spleen_B_cell
850092	99	CTG ...	LFA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Liver
468826	171	TTG ...	LGP ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, R1E, Spleen_B_cell, v6-5
344857	78	GTG ...	VVG ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, R1E, Spleen_B_cell
346002	69	TTG ...	LRR ...	Ribo-seq	TTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, MEF, R1E, Spleen_B_cell, v6-5
1308766	147	AAG ...	KQL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
467779	36	ATG ...	MMP ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Liver, Spleen_B_cell, v6-5
945517	123	GTG ...	VEQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
679110	36	CTG ...	LPS ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF, R1E
11027	33	ATG ...	MLP ...	Ribo-seq	ATG	weak	7	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, Glioma, Liver, MEF, MESC, R1E, Spleen_B_cell, v6-5
677792	90	CTG ...	LFQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
468889	123	CTG ...	LHS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver, R1E, Spleen_B_cell
1306832	51	ATC ...	IRP ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14

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