Transcript 35110 | MetamORF

Transcript

ID CARD

MetamORF ID

35110

ENSMUST00000060188

Name

Ppp1r2-201

Strand

Biotype

protein_coding

Start-end positions

31251537-31275277

CDS Start-stop positions

31254687-31274970

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:66849

Aliases

0610025N14Rik,
2310007G06Rik, 4930440J04Rik, 5430408E15Rik,
D16Ertd248e, ENSMUSG00000047714, I-2,
IPP-2, MGI:1914099, NCBI:66849,
OFF:Ppp1r2, Ppp1r2

Chr 16

ORFs

7 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
35514	36	CTG ...	LRS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14
793909	138	GTG ...	VTE ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	sORF Upstream	B_cell, Neutrophil
952602	129	ACG ...	TPV ...	Ribo-seq	ACG	moderate	2	sORFs_org_Mouse	sORF Upstream	BMDC, E14
421812	135	ACG ...	TET ...	Ribo-seq	ACG	strong	3	sORFs_org_Mouse	sORF Upstream	BMDC, C2C12, E14
1045444	99	GTG ...	VAA ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	sORF Upstream	E14, Neutrophil
1046374	120	GTG ...	VVS ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	sORF Upstream	Neutrophil
35109	63	CTG ...	LEG ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	sORF Upstream	B_cell, Brain, Neutrophil, Testis

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