Transcript 7188 | MetamORF

Transcript

ID CARD

MetamORF ID

7188

ENSMUST00000058265

Name

C1galt1c1-201

Strand

Biotype

protein_coding

Start-end positions

38630785-38635087

CDS Start-stop positions

38631167-38632117

CDS Relative positions

117-1067

Sequences

Transcript sequence

GCC ...

Genome browsers

UCSC

Gene

NCBI:59048

Aliases

1500002I11Rik,
AB030184, C1galt1c1, C1GalT2,
C81205, Cosmc, ENSMUSG00000048970,
MGI:1913493, NCBI:59048, OFF:C1galt1c1

Chr X

ORFs

12 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
633174	102	ATG ...	MSI ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC
633757	36	GTG ...	VRQ ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	sORF Upstream	3T3
635423	117	CTG ...	LPW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3
1591316	30	CTG ...	LIW ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
275546	81	GTG ...	VTK ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
631358	60	TTG ...	LDL ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	sORF Upstream	3T3
277387	45	CTG ...	LNA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
7187	75	CTG ...	LYS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Skin_tumor
766702	39	TTG ...	LGC ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF
628647	66	CTG ...	LPE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
633218	87	CTG ...	LVP ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	sORF Upstream	3T3, Neutrophil
632271	123	TTG ...	LET ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3

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