Transcript 112604

Transcript

ID CARD

MetamORF ID

112604

ENSMUST00000053760

Name

Utp14b-201

Strand

Biotype

protein_coding

Start-end positions

78658038-78671512

CDS Start-stop positions

78664387-78666729

CDS Relative positions

268-2610

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

NCBI:195434

Aliases

4932411L21Rik,
ENSMUSG00000079470, jsd, MGI:2445092,
NCBI:195434, OFF:Utp14b, Utp14b

Chr 1

ORFs

27 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
805861	60	CTG ...	LRS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF Upstream	MEF, Neutrophil
391731	63	TTG ...	LNL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	Brain, v6-5
332807	42	CTG ...	LRS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF Upstream	Brain, E14, Neutrophil
1145855	42	CTG ...	LSG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF Upstream	E14, v6-5
351169	39	CTG ...	LES ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, v6-5
1377598	72	GTG ...	VEH ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1612260	45	ATG ...	MLH ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
302162	33	CTG ...	LSG ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	Brain, v6-5
1361861	39	TTG ...	LHP ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
545448	60	GTG ...	VAY ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
769476	72	CTG ...	LPK ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
131559	93	GTG ...	VAL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, E14
1595833	42	CTG ...	LHC ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1136134	45	ATG ...	MHR ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, v6-5
358107	69	TTG ...	LAL ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Alternative sORF Upstream	Brain, v6-5
384677	57	TTG ...	LRS ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	Brain, v6-5
363261	81	GTG ...	VRL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
1605582	72	TTG ...	LKS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1144617	33	TTG ...	LPS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF Upstream	v6-5
1281908	63	ATG ...	MFS ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
116220	87	CTG ...	LGR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, E14
802603	81	GTG ...	VER ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
112603	54	CTG ...	LRG ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, E14, MEF
398560	45	TTG ...	LLS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF Upstream	Brain, v6-5
1098734	33	CTG ...	LSP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
1151777	30	TTG ...	LNM ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, v6-5
1146072	42	CTG ...	LRV ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5

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