Transcript 509910

Transcript

ID CARD

MetamORF ID

509910

ENSMUST00000052183

Name

Snip1-201

Strand

Biotype

protein_coding

Start-end positions

125066672-125074042

CDS Start-stop positions

125066753-125072930

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

NCBI:76793

Aliases

2410133M08Rik,
ENSMUSG00000050213, MGI:2156003, NCBI:76793,
OFF:Snip1, Snip1

Chr 4

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
553863	39	ATG ...	MRR ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, v6-5
1226433	132	ACG ...	TYL ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
509909	48	GTG ...	VAQ ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Neutrophil, Spleen_B_cell
553570	63	TTG ...	LTG ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, E14, MEF, v6-5
548342	99	ATG ...	MSC ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	Alternative Downstream Overlapping sORF	3T3, Glioma, Liver, MEF, MESC, v6-5
545692	69	CTG ...	LNL ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, E14, MEF, v6-5
1230957	51	AAG ...	KMK ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
1227278	264	ATC ...	ILG ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
513457	33	GTG ...	VQV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Spleen_B_cell
1230501	45	AAG ...	KMM ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
550631	42	ATG ...	MMR ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, v6-5
551321	273	GTG ...	VRT ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
511822	33	ATG ...	MKV ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Spleen_B_cell
547327	87	ATG ...	MSL ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, E14, MEF, v6-5
826013	81	GTG ...	VQS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell
1176949	48	ATG ...	MKM ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF, v6-5
1178162	120	TTG ...	LGS ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF, v6-5
1231576	36	AGG ...	RQW ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
510963	63	ATG ...	MPG ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Spleen_B_cell

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