Transcript 22500 | MetamORF

Transcript

ID CARD

MetamORF ID

22500

ENSMUST00000051493

Name

Pld6-201

Strand

Biotype

processed_transcript

Start-end positions

59783897-59787645

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGT ...

Genome browsers

UCSC

Gene

NCBI:194908

Aliases

4933433K01Rik,
ENSMUSG00000043648, Gm10, MGI:2687283,
mitoPLD, mZuc, NCBI:194908,
OFF:Pld6, Pld6, Zuc

Chr 11

ORFs

18 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
23633	120	CTG ...	LLH ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, Testis
1840287	81	CTG ...	LEE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	R1E
23491	192	TTG ...	LAA ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, Testis
24258	216	CTG ...	LSR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, Testis
23808	96	GTG ...	VRV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, Testis
1844012	297	CTG ...	LRL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
22975	195	CTG ...	LLA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, Testis
1845720	39	CTG ...	LRK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
22734	102	GTG ...	VRV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, Testis
22544	174	TTG ...	LEL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, Testis
22987	126	GTG ...	VQL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, Testis
23418	117	CTG ...	LHQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, Testis
1841711	180	GTG ...	VLI ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	R1E
22499	207	CTG ...	LLR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, Testis
22817	204	CTG ...	LRA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, Testis
1840400	117	CTG ...	LIM ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	R1E
1845562	42	CTG ...	LLR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
23820	138	CTG ...	LGR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	R1E, Testis

Export data